Here is a list of all class members with links to the classes they belong to:

- p -

• pages : pwiz::identdata::BibliographicReference
• Pair() : pwiz::calibration::MassSpread::Pair
• Parabola() : pwiz::math::Parabola
• Param : pwiz::identdata::DelimReader
• param : Root
• param2 : Second
• param3 : Second
• Parameter() : pwiz::data::pepxml::Parameter , pwiz::data::peakdata::Software::Parameter
• parameterCount() : ParametrizedCosine , pwiz::frequency::TruncatedLorentzian , pwiz::frequency::ParametrizedFunction< value_type > , pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
• Parameters : pwiz::frequency::ParameterEstimator
• parameters : pwiz::calibration::CalibratorTrial::State , pwiz::data::pepxml::SearchSummary , pwiz::data::peakdata::Software , pwiz::calibration::Calibrator , pwiz::calibration::LeastSquaresCalibrator , pwiz::frequency::TruncatedLorentzianParameters
• parametersInitialEstimate : pwiz::calibration::CalibratorTrial::Configuration
• parametersTrue : pwiz::calibration::CalibratorTrial::Configuration
• ParametrizedDerivativeSlice() : pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice< value_type >
• ParametrizedFunctionSlice() : pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice< value_type >
• ParamGroup() : pwiz::data::ParamGroup
• paramGroupList_ : pwiz::msdata::mz5::ReferenceWrite_mz5
• paramGroupMapping_ : pwiz::msdata::mz5::ReferenceWrite_mz5
• ParamGroupMZ5() : pwiz::msdata::mz5::ParamGroupMZ5
• paramGroupPtrs : pwiz::data::ParamContainer , pwiz::msdata::MSData
• ParamGroups : pwiz::msdata::mz5::Configuration_mz5
• paramList : pwiz::msdata::mz5::ParamGroupMZ5 , pwiz::msdata::mz5::SourceFileMZ5 , pwiz::msdata::mz5::SampleMZ5 , pwiz::msdata::mz5::SoftwareMZ5 , pwiz::msdata::mz5::ScanSettingMZ5 , pwiz::msdata::mz5::ComponentMZ5 , pwiz::msdata::mz5::InstrumentConfigurationMZ5 , pwiz::msdata::mz5::ProcessingMethodMZ5 , pwiz::msdata::mz5::ChromatogramMZ5 , pwiz::msdata::mz5::ScanMZ5 , pwiz::msdata::mz5::ScansMZ5 , pwiz::msdata::mz5::SpectrumMZ5 , pwiz::msdata::mz5::RunMZ5
• ParamListMZ5() : pwiz::msdata::mz5::ParamListMZ5
• ParamListsMZ5() : pwiz::msdata::mz5::ParamListsMZ5
• params : pwiz::analysis::MS2Deisotoper , pwiz::analysis::MS2NoiseFilter , pwiz::analysis::PrecursorMassFilter
• parent : pwiz::identdata::Organization
• parent_file : pwiz::data::pepxml::DataFilter
• parentsIsA : pwiz::cv::CVTermInfo , pwiz::data::Term
• parentsPartOf : pwiz::cv::CVTermInfo , pwiz::data::Term
• parentTolerance : pwiz::identdata::SpectrumIdentificationProtocol
• parse() : pwiz::util::IntegerSet
• parseAttributes() : pwiz::minimxml::SAXParser::Handler::Attributes
• parseCharacters : pwiz::minimxml::SAXParser::Handler
• partialDiffOK : pwiz::data::BaseDiffConfig
• passThreshold : pwiz::identdata::SpectrumIdentificationItem , pwiz::identdata::ProteinDetectionHypothesis
• pastMaxIndex : SelectedIndexPredicate
• path : pwiz::identdata::CVMap
• pathmask : TestPathmask
• pathnameArray : TestPathmask
• pattern : pwiz::identdata::RegexCVMap
• Peak : pwiz::frequency::FrequencyEstimator , pwiz::analysis::PeakelGrower , pwiz::analysis::PeakExtractor , pwiz::analysis::PeakFitter , pwiz::data::peakdata::Peak
• peak : pwiz::analysis::RegionAnalyzer::SpectrumStats , pwiz::data::peakdata::HandlerPeak
• peakCount : pwiz::frequency::PeakDetectorMatchedFilter::Score
• peakel : pwiz::data::peakdata::HandlerPeakel
• Peakel() : pwiz::data::peakdata::Peakel
• peakelGrower_ : pwiz::analysis::FeatureDetectorPeakel
• peakelGrower_Proximity : pwiz::analysis::FeatureDetectorPeakel::Config
• PeakelGrower_Proximity() : pwiz::analysis::PeakelGrower_Proximity
• peakelPicker_ : pwiz::analysis::FeatureDetectorPeakel
• peakelPicker_Basic : pwiz::analysis::FeatureDetectorPeakel::Config
• PeakelPicker_Basic() : pwiz::analysis::PeakelPicker_Basic
• peakels : pwiz::data::peakdata::Feature
• PeakExtractor() : pwiz::analysis::PeakExtractor
• peakExtractor_ : pwiz::analysis::FeatureDetectorPeakel
• peakFamilies : pwiz::data::peakdata::Scan
• PeakFamily : pwiz::analysis::PeakFamilyDetector , pwiz::data::peakdata::PeakFamily
• peakFamilyDetector : pwiz::analysis::PrecursorRecalculatorDefault::Config
• PeakFamilyDetectorFT() : pwiz::analysis::PeakFamilyDetectorFT
• peakFinder_ : pwiz::analysis::PeakExtractor
• peakFinder_SNR : pwiz::analysis::FeatureDetectorPeakel::Config
• PeakFinder_SNR() : pwiz::analysis::PeakFinder_SNR
• peakFitter_ : pwiz::analysis::PeakExtractor
• peakFitter_Parabola : pwiz::analysis::FeatureDetectorPeakel::Config
• PeakFitter_Parabola() : pwiz::analysis::PeakFitter_Parabola
• peakMaxCorrelationAngle : pwiz::frequency::PeakDetectorMatchedFilter::Config
• peaks : pwiz::frequency::PeakDetectorMatchedFilter::Score , pwiz::data::peakdata::PeakFamily , pwiz::data::peakdata::Peakel , ScanCacheStruct , pwiz::utility::MSIHandler::Record
• peaksCount : pwiz::msdata::SpectrumIdentityFromMzXML , ScanHeaderStruct
• peakThresholdFactor : pwiz::frequency::PeakDetectorMatchedFilter::Config
• Pep2MzIdent() : pwiz::identdata::Pep2MzIdent
• Peptide() : pwiz::identdata::Peptide , pwiz::proteome::Peptide , pwiz::tradata::Peptide
• peptide : pwiz::analysis::PepxmlRecordReader::record , pwiz::data::pepxml::SearchHit
• Peptide : pwiz::identdata::Serializer_Text , pwiz::chemistry::IsotopeEnvelopeEstimator::Config
• Peptide::Impl : pwiz::proteome::ModificationMap
• peptide_id : pwiz::analysis::Pseudo2DGel::Config
• peptideCount : pwiz::eharmony::FeatureSequenced
• PeptideDatabaseFormula() : pwiz::proteome::PeptideDatabaseFormula
• PeptideDatabaseRecord() : pwiz::proteome::PeptideDatabaseRecord
• peptideEntries : pwiz::eharmony::MSIAMTData
• PeptideEntry() : pwiz::eharmony::PeptideEntry
• peptideEvidence : pwiz::identdata::SequenceCollection
• PeptideEvidence() : pwiz::identdata::PeptideEvidence
• peptideEvidencePtr : pwiz::identdata::SpectrumIdentificationItem , pwiz::identdata::PeptideHypothesis
• peptideHypothesis : pwiz::identdata::ProteinDetectionHypothesis
• PeptideID_dataFetcher() : pwiz::eharmony::PeptideID_dataFetcher
• PeptideID_flat() : pwiz::peptideid::PeptideID_flat
• PeptideID_pepXml() : pwiz::peptideid::PeptideID_pepXml
• PeptideMatcher() : pwiz::eharmony::PeptideMatcher
• peptideNextAA : pwiz::data::pepxml::SearchHit
• peptidePrevAA : pwiz::data::pepxml::SearchHit
• peptideProphet : pwiz::eharmony::Observation
• peptideprophet_summary : pwiz::data::pepxml::AnalysisSummary
• peptideProphetResult : pwiz::data::pepxml::AnalysisResult
• PeptideProphetResult() : pwiz::data::pepxml::PeptideProphetResult
• peptidePtr : pwiz::identdata::PeptideEvidence , pwiz::identdata::SpectrumIdentificationItem , pwiz::tradata::Transition , pwiz::tradata::Target
• peptidePtrs : pwiz::tradata::TraData
• peptides : pwiz::identdata::SequenceCollection
• peptideSequence : pwiz::eharmony::PeptideEntry , pwiz::identdata::Peptide
• peptideTerminus : pwiz::data::pepxml::AminoAcidModification
• pepxmlfile : pwiz::analysis::PepxmlRecordReader::Config
• PepxmlRecordReader() : pwiz::analysis::PepxmlRecordReader
• Person() : pwiz::identdata::Person
• pick() : pwiz::analysis::PeakelPicker , pwiz::analysis::PeakelPicker_Basic
• PiecewiseLinearWarpFunction() : pwiz::eharmony::PiecewiseLinearWarpFunction
• pimpl : pwiz::utility::TabReader , pwiz::peptideid::PeptideID::Iterator , pwiz::peptideid::PeptideID_flat , pwiz::peptideid::PeptideID_pepXml , pwiz::identdata::DelimReader , pwiz::identdata::MascotReader , pwiz::identdata::Pep2MzIdent , pwiz::utility::MSIHandler , pwiz::utility::DefaultTabHandler
• pixel() : pwiz::util::Image
• Point() : pwiz::util::Image::Point
• pointer : pwiz::proteome::Digestion::const_iterator , pwiz::msdata::SpectrumIterator , pwiz::util::CharIndexedVectorIterator< T > , pwiz::util::CharIndexedVectorConstIterator< T > , pwiz::util::IntegerSet::Iterator , pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc > , pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
• PointsToSame() : PointsToSame
• polarity : pwiz::analysis::SpectrumList_FilterPredicate_Polarity
• polynomialOrder : TestData
• pop_back() : auto_vector< T >
• popStyle() : pwiz::minimxml::XMLWriter
• position() : pwiz::minimxml::XMLWriter , pwiz::data::pepxml::ModAminoAcidMass
• positionNext() : pwiz::minimxml::XMLWriter
• positiveMs2Only : pwiz::analysis::Pseudo2DGel::Config
• possible_charges : TestSpectrumInfo
• possibleCharges : ScanHeaderStruct
• possibleChargesArray : ScanHeaderStruct
• post : pwiz::identdata::PeptideEvidence
• PPM : pwiz::chemistry::MZTolerance
• ppProb : pwiz::eharmony::FeatureSequenced
• pre : pwiz::identdata::PeptideEvidence
• precision : pwiz::data::BaseDiffConfig
• Precision : pwiz::msdata::BinaryDataEncoder
• precision : pwiz::analysis::SpectrumBinaryData::Config , pwiz::msdata::BinaryDataEncoder::Config
• Precision_32 : pwiz::msdata::BinaryDataEncoder
• Precision_64 : pwiz::msdata::BinaryDataEncoder
• precisionOverrides : pwiz::msdata::BinaryDataEncoder::Config
• Precursor() : pwiz::msdata::Precursor
• precursor : pwiz::msdata::Chromatogram , pwiz::msdata::mz5::ChromatogramMZ5 , pwiz::tradata::Transition , pwiz::tradata::Target
• precursor_ion_charge : pwiz::data::pepxml::MixtureModel
• precursor_mz : TestSpectrumInfo
• precursorCharge : ScanHeaderStruct , TestMS2Denoise
• PrecursorInfo() : pwiz::msdata::SpectrumInfo::PrecursorInfo , pwiz::analysis::PrecursorRecalculator::PrecursorInfo , pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo
• precursorIntensity : ScanHeaderStruct
• precursorList : pwiz::msdata::mz5::SpectrumMZ5
• PrecursorListMZ5() : pwiz::msdata::mz5::PrecursorListMZ5
• precursorMass : TestMS2Denoise
• PrecursorMassFilter() : pwiz::analysis::PrecursorMassFilter
• precursorMassType : pwiz::data::pepxml::SearchSummary
• precursorMZ : ScanHeaderStruct
• PrecursorMZ5() : pwiz::msdata::mz5::PrecursorMZ5
• precursorMzSet_ : pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet
• precursorNeutralMass : pwiz::data::pepxml::SpectrumQuery
• PrecursorRecalculatorDefault() : pwiz::analysis::PrecursorRecalculatorDefault
• precursors : pwiz::msdata::Spectrum , pwiz::msdata::SpectrumInfo
• precursorScanNum : ScanHeaderStruct
• PredicatePtr : pwiz::analysis::ProteinList_DecoyGenerator
• prediction : pwiz::tradata::Transition
• prefix : pwiz::data::Term , pwiz::msdata::mz5::CVRefMZ5Data , pwiz::data::OBO , pwiz::cv::CVTermInfo
• preprocess() : ParametrizedCosine
• preprocessWithLogarithm : pwiz::analysis::PeakFinder_SNR::Config
• PRINT_HDF5_EXCEPTIONS : pwiz::msdata::mz5::Configuration_mz5
• print_headers() : pwiz::analysis::PepxmlRecordReader
• PrintAttribute() : PrintAttribute
• printDifferenceQuotientSequence() : pwiz::frequency::DerivativeTest::VectorFunction< value_type >
• PrintEventHandler() : PrintEventHandler
• prior_probability : pwiz::data::pepxml::MixtureModel
• prob_comp : pwiz::analysis::Pseudo2DGel
• probability : pwiz::data::pepxml::PeptideProphetResult , pwiz::calibration::MassSpread::Pair
• process() : pwiz::analysis::Pseudo2DGel::Config , pwiz::utility::TabReader
• processFiles() : pwiz::eharmony::Matcher
• processingInstruction() : pwiz::minimxml::SAXParser::Handler , PrintEventHandler , pwiz::minimxml::XMLWriter
• ProcessingMethod() : pwiz::msdata::ProcessingMethod
• processingMethodList : pwiz::msdata::mz5::DataProcessingMZ5
• ProcessingMethodListMZ5() : pwiz::msdata::mz5::ProcessingMethodListMZ5
• ProcessingMethodMZ5() : pwiz::msdata::mz5::ProcessingMethodMZ5
• processingMethods : pwiz::msdata::DataProcessing
• product : pwiz::msdata::Chromatogram , pwiz::tradata::Transition
• productIsolationWindow : pwiz::msdata::mz5::ChromatogramMZ5
• productList : pwiz::msdata::mz5::SpectrumMZ5
• products : pwiz::msdata::Spectrum
• progress() : CancelProgressCallback , pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback , SimpleProgressCallback
• prompt() : pwiz::util::ClickwrapPrompter
• propertyValues : pwiz::data::Term , pwiz::cv::CVTermInfo
• protein() : pwiz::proteome::ProteinListWrapper , pwiz::proteome::ProteinListSimple , pwiz::analysis::PepxmlRecordReader::record , pwiz::analysis::ProteinList_Filter
• Protein : pwiz::identdata::Serializer_Text
• protein() : pwiz::proteome::ProteinListCache
• Protein() : pwiz::tradata::Protein
• protein() : pwiz::proteome::ProteinList
• Protein() : pwiz::proteome::Protein
• protein() : pwiz::analysis::ProteinList_DecoyGenerator , FilterWrapper , pwiz::data::pepxml::SearchHit , pwiz::data::pepxml::AlternativeProtein
• protein_descr : pwiz::peptideid::PeptideID::Record
• ProteinAmbiguityGroup() : pwiz::identdata::ProteinAmbiguityGroup
• proteinAmbiguityGroup : pwiz::identdata::ProteinDetectionList
• proteinDescr : pwiz::data::pepxml::AlternativeProtein , pwiz::data::pepxml::SearchHit
• ProteinDescription : pwiz::identdata::Serializer_Text
• ProteinDetection() : pwiz::identdata::ProteinDetection
• proteinDetection : pwiz::identdata::AnalysisCollection
• proteinDetectionHypothesis : pwiz::identdata::ProteinAmbiguityGroup
• ProteinDetectionHypothesis() : pwiz::identdata::ProteinDetectionHypothesis
• ProteinDetectionList() : pwiz::identdata::ProteinDetectionList
• proteinDetectionListPtr : pwiz::identdata::ProteinDetection , pwiz::identdata::AnalysisData
• proteinDetectionProtocol : pwiz::identdata::AnalysisProtocolCollection
• ProteinDetectionProtocol() : pwiz::identdata::ProteinDetectionProtocol
• proteinDetectionProtocolPtr : pwiz::identdata::ProteinDetection
• ProteinList_DecoyGenerator() : pwiz::analysis::ProteinList_DecoyGenerator
• ProteinList_DecoyGeneratorPredicate_Reversed() : pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Reversed
• ProteinList_DecoyGeneratorPredicate_Shuffled() : pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled
• ProteinList_Filter() : pwiz::analysis::ProteinList_Filter
• ProteinList_FilterPredicate_IdSet() : pwiz::analysis::ProteinList_FilterPredicate_IdSet
• ProteinList_FilterPredicate_IndexSet() : pwiz::analysis::ProteinList_FilterPredicate_IndexSet
• ProteinListCache() : pwiz::proteome::ProteinListCache
• proteinListPtr : pwiz::proteome::ProteomeData
• ProteinListWrapper() : pwiz::proteome::ProteinListWrapper
• proteinPtrs : pwiz::tradata::Peptide , pwiz::tradata::TraData
• proteins : pwiz::proteome::ProteinListSimple
• ProteomeData() : pwiz::proteome::ProteomeData
• ProteomeDataFile() : pwiz::proteome::ProteomeDataFile
• Provider() : pwiz::identdata::Provider
• provider : pwiz::identdata::IdentData
• Pseudo2DGel() : pwiz::analysis::Pseudo2DGel
• publication : pwiz::identdata::BibliographicReference
• publications : pwiz::tradata::TraData
• publisher : pwiz::identdata::BibliographicReference
• push_back() : auto_vector< T >
• pushStyle() : pwiz::minimxml::XMLWriter
• putFeatureRetentionTimes() : pwiz::eharmony::DataFetcherContainer
• putPeptideRetentionTimes() : pwiz::eharmony::DataFetcherContainer
• pvalue() : pwiz::analysis::Noise
• pwiz_RAMPAdapter() : pwiz_RAMPAdapter