pwiz::analysis::Pseudo2DGel Class Reference

Creates pseudo-2D-gel images from survey scan data. More...

#include <Pseudo2DGel.hpp>

Inheritance diagram for pwiz::analysis::Pseudo2DGel:

List of all members.

Classes
struct	Config
	Holds the configuration for an instance of Pseudo2DGel. More...

Public Types
enum	MarkupShape { circle = 0, square = 1 }

Public Member Functions
	Pseudo2DGel (const MSDataCache &cache, const Config &config)
MSDataAnalyzer interface
virtual void	open (const DataInfo &dataInfo)
	start analysis of the data
virtual UpdateRequest	updateRequested (const DataInfo &dataInfo, const SpectrumIdentity &spectrumIdentity) const
	ask analyzer if it wants an update
virtual void	update (const DataInfo &dataInfo, const Spectrum &spectrum)
	analyze a single spectrum
virtual void	close (const DataInfo &dataInfo)
	end analysis of the data
Public Member Functions inherited from pwiz::analysis::MSDataAnalyzer
virtual	~MSDataAnalyzer ()

Private Member Functions
	Pseudo2DGel (Pseudo2DGel &)
Pseudo2DGel &	operator= (Pseudo2DGel &)

Private Attributes
boost::shared_ptr< Impl >	impl_

Friends
struct	prob_comp

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Detailed Description

Creates pseudo-2D-gel images from survey scan data.

The Pseudo2DGel class is a data analyzer that constructs an image from data in to the update method by a MSDataAnalyzerDriver object. FT and IT scans are separated and, if present, used to construct two separate images. Output is controlled by the Pseudo2DGel::Config object passed to the constructor.

Definition at line 48 of file Pseudo2DGel.hpp.

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Member Enumeration Documentation

enum pwiz::analysis::Pseudo2DGel::MarkupShape

Enumerator:

circle
square

Definition at line 52 of file Pseudo2DGel.hpp.

    {
        circle = 0,
        square = 1
    };

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Constructor & Destructor Documentation

pwiz::analysis::Pseudo2DGel::Pseudo2DGel	(	const MSDataCache &	cache,
		const Config &	config
	)

pwiz::analysis::Pseudo2DGel::Pseudo2DGel ( Pseudo2DGel &  )

private

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Member Function Documentation

virtual void pwiz::analysis::Pseudo2DGel::open ( const DataInfo &  dataInfo )

virtual

start analysis of the data

Reimplemented from pwiz::analysis::MSDataAnalyzer.

virtual UpdateRequest pwiz::analysis::Pseudo2DGel::updateRequested ( const DataInfo &  dataInfo, const SpectrumIdentity &  spectrumIdentity  ) const

virtual

ask analyzer if it wants an update

Reimplemented from pwiz::analysis::MSDataAnalyzer.

virtual void pwiz::analysis::Pseudo2DGel::update ( const DataInfo &  dataInfo, const Spectrum &  spectrum  )

virtual

analyze a single spectrum

Reimplemented from pwiz::analysis::MSDataAnalyzer.

virtual void pwiz::analysis::Pseudo2DGel::close ( const DataInfo &  dataInfo )

virtual

end analysis of the data

Reimplemented from pwiz::analysis::MSDataAnalyzer.

Pseudo2DGel& pwiz::analysis::Pseudo2DGel::operator= ( Pseudo2DGel &  )

private

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Friends And Related Function Documentation

friend struct prob_comp

friend

Definition at line 148 of file Pseudo2DGel.hpp.

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Member Data Documentation

boost::shared_ptr<Impl> pwiz::analysis::Pseudo2DGel::impl_

private

Definition at line 143 of file Pseudo2DGel.hpp.

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The documentation for this class was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/analysis/passive/Pseudo2DGel.hpp