pwiz::data::pepxml::SearchSummary Struct Reference

Database search settings. More...

#include <MinimumPepXML.hpp>

List of all members.

Public Member Functions
	SearchSummary ()
void	write (XMLWriter &writer) const
void	read (std::istream &is)
bool	operator== (const SearchSummary &that) const
bool	operator!= (const SearchSummary &that) const

Public Attributes
std::string	baseName
	Full path location of mzXML file for this search run (without the .mzXML extension)
std::string	searchEngine
	SEQUEST, Mascot, COMET, etc.
std::string	precursorMassType
	average or monoisotopic
std::string	fragmentMassType
	average or monoisotopic
std::string	searchID
	Format of file storing the runner up peptides (if not present in pepXML)
SearchDatabase	searchDatabase
	runner up search hit data type extension (e.g. .tgz)
size_t	search_id
	matches id in search hit
EnzymaticSearchConstraint	enzymaticSearchConstraint
std::vector < AminoAcidModification >	aminoAcidModifications
std::vector< ParameterPtr >	parameters

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Detailed Description

Database search settings.

Definition at line 424 of file MinimumPepXML.hpp.

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Constructor & Destructor Documentation

pwiz::data::pepxml::SearchSummary::SearchSummary ( )

inline

Definition at line 426 of file MinimumPepXML.hpp.

{}

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Member Function Documentation

void pwiz::data::pepxml::SearchSummary::write

(

XMLWriter &

writer

)

const

Referenced by testSearchSummary().

void pwiz::data::pepxml::SearchSummary::read

(

std::istream &

is

)

Referenced by testSearchSummary().

bool pwiz::data::pepxml::SearchSummary::operator==

(

const SearchSummary &

that

)

const

bool pwiz::data::pepxml::SearchSummary::operator!=

(

const SearchSummary &

that

)

const

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Member Data Documentation

std::string pwiz::data::pepxml::SearchSummary::baseName

Full path location of mzXML file for this search run (without the .mzXML extension)

Definition at line 430 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

std::string pwiz::data::pepxml::SearchSummary::searchEngine

SEQUEST, Mascot, COMET, etc.

Definition at line 433 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

std::string pwiz::data::pepxml::SearchSummary::precursorMassType

average or monoisotopic

Definition at line 436 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

std::string pwiz::data::pepxml::SearchSummary::fragmentMassType

average or monoisotopic

Definition at line 439 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

std::string pwiz::data::pepxml::SearchSummary::searchID

Format of file storing the runner up peptides (if not present in pepXML)

Definition at line 443 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

SearchDatabase pwiz::data::pepxml::SearchSummary::searchDatabase

runner up search hit data type extension (e.g. .tgz)

Definition at line 446 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

size_t pwiz::data::pepxml::SearchSummary::search_id

matches id in search hit

Definition at line 449 of file MinimumPepXML.hpp.

EnzymaticSearchConstraint pwiz::data::pepxml::SearchSummary::enzymaticSearchConstraint

Definition at line 451 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

std::vector<AminoAcidModification> pwiz::data::pepxml::SearchSummary::aminoAcidModifications

Definition at line 452 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

std::vector<ParameterPtr> pwiz::data::pepxml::SearchSummary::parameters

Definition at line 454 of file MinimumPepXML.hpp.

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The documentation for this struct was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/misc/MinimumPepXML.hpp