pwiz::data::pepxml Namespace Reference

Classes
struct	Specificity
struct	SampleEnzyme
struct	SearchDatabase
struct	Q3RatioResult
struct	RocDataPoint
struct	ErrorPoint
struct	DistributionPoint
struct	MixtureModel
struct	PeptideProphetSummary
struct	PeptideProphetResult
struct	AnalysisResult
struct	AlternativeProtein
struct	ModAminoAcidMass
struct	ModificationInfo
struct	Parameter
struct	SearchScore
struct	SearchHit
struct	SearchResult
struct	EnzymaticSearchConstraint
struct	AminoAcidModification
struct	SearchSummary
	Database search settings. More...
struct	AnalysisTimestamp
	Reference for analysis applied to current run (time corresponds with analysis_summary/, id corresponds with analysis_result/) More...
struct	SpectrumQuery
struct	MSMSRunSummary
struct	AnalysisSummary
struct	DataFilter
struct	DatasetDerivation
	Source and filtering criteria used to generate dataset. More...
struct	MSMSPipelineAnalysis
struct	Match
struct	MatchData

Typedefs
typedef boost::shared_ptr < Parameter >	ParameterPtr
typedef boost::shared_ptr < SearchScore >	SearchScorePtr
typedef boost::shared_ptr < SearchHit >	SearchHitPtr
typedef boost::shared_ptr < SearchResult >	SearchResultPtr
typedef boost::shared_ptr < SearchSummary >	SearchSummaryPtr
typedef boost::shared_ptr < SpectrumQuery >	SpectrumQueryPtr
typedef boost::shared_ptr < AnalysisSummary >	AnalysisSummaryPtr
typedef boost::shared_ptr < DataFilter >	DataFilterPtr
typedef boost::shared_ptr < DatasetDerivation >	DatasetDerivationPtr
typedef boost::shared_ptr< Match >	MatchPtr

Functions
void	setLogStream (std::ostream &os)
PWIZ_API_DECL bool	operator== (const SearchHitPtr left, const SearchHitPtr right)
PWIZ_API_DECL bool	operator== (SearchResultPtr left, SearchResultPtr right)
PWIZ_API_DECL bool	operator== (const SearchSummaryPtr left, const SearchSummaryPtr right)
PWIZ_API_DECL bool	operator== (const SpectrumQueryPtr left, const SpectrumQueryPtr right)
PWIZ_API_DECL bool	operator== (const MatchPtr left, const MatchPtr right)

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Typedef Documentation

typedef boost::shared_ptr<Parameter> pwiz::data::pepxml::ParameterPtr

Definition at line 310 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<SearchScore> pwiz::data::pepxml::SearchScorePtr

Definition at line 324 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<SearchHit> pwiz::data::pepxml::SearchHitPtr

Definition at line 359 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<SearchResult> pwiz::data::pepxml::SearchResultPtr

Definition at line 381 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<SearchSummary> pwiz::data::pepxml::SearchSummaryPtr

Definition at line 464 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<SpectrumQuery> pwiz::data::pepxml::SpectrumQueryPtr

Definition at line 520 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<AnalysisSummary> pwiz::data::pepxml::AnalysisSummaryPtr

Definition at line 567 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<DataFilter> pwiz::data::pepxml::DataFilterPtr

Definition at line 583 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<DatasetDerivation> pwiz::data::pepxml::DatasetDerivationPtr

Definition at line 595 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<Match> pwiz::data::pepxml::MatchPtr

Definition at line 668 of file MinimumPepXML.hpp.

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Function Documentation

void pwiz::data::pepxml::setLogStream

(

std::ostream &

os

)

PWIZ_API_DECL bool pwiz::data::pepxml::operator==	(	const SearchHitPtr	left,
		const SearchHitPtr	right
	)

PWIZ_API_DECL bool pwiz::data::pepxml::operator==	(	SearchResultPtr	left,
		SearchResultPtr	right
	)

PWIZ_API_DECL bool pwiz::data::pepxml::operator==	(	const SearchSummaryPtr	left,
		const SearchSummaryPtr	right
	)

PWIZ_API_DECL bool pwiz::data::pepxml::operator==	(	const SpectrumQueryPtr	left,
		const SpectrumQueryPtr	right
	)

PWIZ_API_DECL bool pwiz::data::pepxml::operator==	(	const MatchPtr	left,
		const MatchPtr	right
	)