pwiz::data::pepxml::SampleEnzyme Struct Reference

#include <MinimumPepXML.hpp>

List of all members.

Public Member Functions
	SampleEnzyme ()
void	write (XMLWriter &writer) const
void	read (std::istream &is)
bool	operator== (const SampleEnzyme &that) const
bool	operator!= (const SampleEnzyme &that) const

Public Attributes
std::string	name
	Controlled code name for the enzyme that can be referred to by applications.
std::string	description
	Free text to describe alternative names, special conditions, etc.
std::string	fidelity
	Semispecific means that at least one end of a pepide must conform to the cleavage specificity, (unless the peptide was at the terminus of the parent sequence).
boost::tribool	independent
	If there are multiple specificities and independent is true, then a single peptide cannot exhibit one specificity at one terminus and a different specificity at the other.
Specificity	specificity

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Detailed Description

Definition at line 76 of file MinimumPepXML.hpp.

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Constructor & Destructor Documentation

pwiz::data::pepxml::SampleEnzyme::SampleEnzyme ( )

inline

Definition at line 78 of file MinimumPepXML.hpp.

: independent(boost::indeterminate) {}

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Member Function Documentation

void pwiz::data::pepxml::SampleEnzyme::write

(

XMLWriter &

writer

)

const

Referenced by testSampleEnzyme().

void pwiz::data::pepxml::SampleEnzyme::read

(

std::istream &

is

)

Referenced by testSampleEnzyme().

bool pwiz::data::pepxml::SampleEnzyme::operator==

(

const SampleEnzyme &

that

)

const

bool pwiz::data::pepxml::SampleEnzyme::operator!=

(

const SampleEnzyme &

that

)

const

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Member Data Documentation

std::string pwiz::data::pepxml::SampleEnzyme::name

Controlled code name for the enzyme that can be referred to by applications.

Definition at line 82 of file MinimumPepXML.hpp.

Referenced by makeSampleEnzyme().

std::string pwiz::data::pepxml::SampleEnzyme::description

Free text to describe alternative names, special conditions, etc.

Definition at line 86 of file MinimumPepXML.hpp.

Referenced by makeSampleEnzyme().

std::string pwiz::data::pepxml::SampleEnzyme::fidelity

Semispecific means that at least one end of a pepide must conform to the cleavage specificity, (unless the peptide was at the terminus of the parent sequence).

Nonspecific means that neither end of a peptide must conform to the cleavage specificity.

Definition at line 93 of file MinimumPepXML.hpp.

Referenced by makeSampleEnzyme().

boost::tribool pwiz::data::pepxml::SampleEnzyme::independent

If there are multiple specificities and independent is true, then a single peptide cannot exhibit one specificity at one terminus and a different specificity at the other.

If independent is false, then a single peptide can exhibit mixed specificities.

Definition at line 100 of file MinimumPepXML.hpp.

Referenced by makeSampleEnzyme().

Specificity pwiz::data::pepxml::SampleEnzyme::specificity

Definition at line 102 of file MinimumPepXML.hpp.

Referenced by makeSampleEnzyme().

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The documentation for this struct was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/misc/MinimumPepXML.hpp