pwiz::data::pepxml::Specificity Struct Reference

#include <MinimumPepXML.hpp>

List of all members.

Public Member Functions
	Specificity ()
void	write (XMLWriter &writer) const
void	read (std::istream &is)
bool	operator== (const Specificity &that) const
bool	operator!= (const Specificity &that) const

Public Attributes
std::string	cut
	One or more 1-letter residue codes.
std::string	noCut
	Zero or more 1-letter residue codes.
std::string	sense
	Defines whether cleavage occurs on the C-terminal or N-terminal side of the residue(s) listed in cut (values "C" or "N")
size_t	minSpace
	minimum separation between adjacent cleavages. default 1.

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Detailed Description

Definition at line 44 of file MinimumPepXML.hpp.

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Constructor & Destructor Documentation

pwiz::data::pepxml::Specificity::Specificity ( )

inline

Definition at line 46 of file MinimumPepXML.hpp.

: minSpace(1) {}

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Member Function Documentation

void pwiz::data::pepxml::Specificity::write

(

XMLWriter &

writer

)

const

Referenced by testSpecificity().

void pwiz::data::pepxml::Specificity::read

(

std::istream &

is

)

Referenced by testSpecificity().

bool pwiz::data::pepxml::Specificity::operator==

(

const Specificity &

that

)

const

bool pwiz::data::pepxml::Specificity::operator!=

(

const Specificity &

that

)

const

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Member Data Documentation

std::string pwiz::data::pepxml::Specificity::cut

One or more 1-letter residue codes.

Enzyme cleaves on the sense side of the residue(s) listed in cut unless one of the residues listed in no_cut is adjacent to the potential cleavage site.

Definition at line 52 of file MinimumPepXML.hpp.

Referenced by makeSpecificity().

std::string pwiz::data::pepxml::Specificity::noCut

Zero or more 1-letter residue codes.

Enzyme cleaves on the sense side of the residue(s) listed in cut unless one of the residues listed in no_cut is adjacent to the potential cleavage site.

Definition at line 58 of file MinimumPepXML.hpp.

Referenced by makeSpecificity().

std::string pwiz::data::pepxml::Specificity::sense

Defines whether cleavage occurs on the C-terminal or N-terminal side of the residue(s) listed in cut (values "C" or "N")

Definition at line 63 of file MinimumPepXML.hpp.

Referenced by makeSpecificity().

size_t pwiz::data::pepxml::Specificity::minSpace

minimum separation between adjacent cleavages. default 1.

Definition at line 66 of file MinimumPepXML.hpp.

Referenced by makeSpecificity().

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The documentation for this struct was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/misc/MinimumPepXML.hpp