pwiz::data::pepxml::SearchHit Struct Reference

#include <MinimumPepXML.hpp>

List of all members.

Public Member Functions
	SearchHit ()
void	write (XMLWriter &writer) const
void	read (std::istream &is)
bool	operator== (const SearchHit &that) const
bool	operator!= (const SearchHit &that) const

Public Attributes
int	hitRank
std::string	peptide
std::string	peptidePrevAA
std::string	peptideNextAA
std::string	protein
std::string	proteinDescr
int	numTotalProteins
int	numMatchedIons
int	totalNumIons
double	calcNeutralPepMass
double	massDiff
int	numTolTerm
int	numMissedCleavages
int	isRejected
AnalysisResult	analysisResult
std::vector< AlternativeProtein >	alternativeProteins
ModificationInfo	modificationInfo
std::vector< SearchScorePtr >	searchScore

---

Detailed Description

Definition at line 327 of file MinimumPepXML.hpp.

---

Constructor & Destructor Documentation

pwiz::data::pepxml::SearchHit::SearchHit ( )

inline

Definition at line 329 of file MinimumPepXML.hpp.

: hitRank(0),numTotalProteins(0), numMatchedIons(0), totalNumIons(0), calcNeutralPepMass(0), massDiff(0), numTolTerm(0), numMissedCleavages(0), isRejected(0) {}

---

Member Function Documentation

void pwiz::data::pepxml::SearchHit::write

(

XMLWriter &

writer

)

const

Referenced by testSearchHit().

void pwiz::data::pepxml::SearchHit::read

(

std::istream &

is

)

Referenced by testSearchHit().

bool pwiz::data::pepxml::SearchHit::operator==

(

const SearchHit &

that

)

const

bool pwiz::data::pepxml::SearchHit::operator!=

(

const SearchHit &

that

)

const

---

Member Data Documentation

int pwiz::data::pepxml::SearchHit::hitRank

Definition at line 331 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

std::string pwiz::data::pepxml::SearchHit::peptide

Definition at line 332 of file MinimumPepXML.hpp.

Referenced by makeSearchHit(), and makeSpectrumQuery().

std::string pwiz::data::pepxml::SearchHit::peptidePrevAA

Definition at line 333 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

std::string pwiz::data::pepxml::SearchHit::peptideNextAA

Definition at line 334 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

std::string pwiz::data::pepxml::SearchHit::protein

Definition at line 335 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

std::string pwiz::data::pepxml::SearchHit::proteinDescr

Definition at line 336 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

int pwiz::data::pepxml::SearchHit::numTotalProteins

Definition at line 337 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

int pwiz::data::pepxml::SearchHit::numMatchedIons

Definition at line 338 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

int pwiz::data::pepxml::SearchHit::totalNumIons

Definition at line 339 of file MinimumPepXML.hpp.

double pwiz::data::pepxml::SearchHit::calcNeutralPepMass

Definition at line 340 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

double pwiz::data::pepxml::SearchHit::massDiff

Definition at line 341 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

int pwiz::data::pepxml::SearchHit::numTolTerm

Definition at line 342 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

int pwiz::data::pepxml::SearchHit::numMissedCleavages

Definition at line 343 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

int pwiz::data::pepxml::SearchHit::isRejected

Definition at line 344 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

AnalysisResult pwiz::data::pepxml::SearchHit::analysisResult

Definition at line 345 of file MinimumPepXML.hpp.

Referenced by makeSearchHit(), and makeSpectrumQuery().

std::vector<AlternativeProtein> pwiz::data::pepxml::SearchHit::alternativeProteins

Definition at line 346 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

ModificationInfo pwiz::data::pepxml::SearchHit::modificationInfo

Definition at line 347 of file MinimumPepXML.hpp.

Referenced by makeSearchHit().

std::vector<SearchScorePtr> pwiz::data::pepxml::SearchHit::searchScore

Definition at line 349 of file MinimumPepXML.hpp.

---

The documentation for this struct was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/misc/MinimumPepXML.hpp