pwiz::eharmony::PeptideID_dataFetcher Class Reference

#include <PeptideID_dataFetcher.hpp>

List of all members.

Public Member Functions
	PeptideID_dataFetcher ()
	PeptideID_dataFetcher (std::istream &is, const double &threshold=.9)
	PeptideID_dataFetcher (const std::vector< boost::shared_ptr< SpectrumQuery > > &sqs)
	PeptideID_dataFetcher (const MSMSPipelineAnalysis &mspa)
void	update (const SpectrumQuery &sq)
void	erase (const SpectrumQuery &sq)
void	merge (const PeptideID_dataFetcher &that)
size_t	size ()
std::vector< boost::shared_ptr < SpectrumQuery > >	getAllContents () const
std::vector< boost::shared_ptr < SpectrumQuery > >	getSpectrumQueries (double mz, double rt)
Bin< SpectrumQuery >	getBin () const
void	setRtAdjustedFlag (const bool &flag)
const bool &	getRtAdjustedFlag () const
bool	operator== (const PeptideID_dataFetcher &that)
bool	operator!= (const PeptideID_dataFetcher &that)

Public Attributes
std::string	id

Private Member Functions
	PeptideID_dataFetcher (PeptideID_dataFetcher &)
PeptideID_dataFetcher	operator= (PeptideID_dataFetcher &)

Private Attributes
bool	_rtAdjusted
Bin< SpectrumQuery >	_bin

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Detailed Description

Definition at line 44 of file PeptideID_dataFetcher.hpp.

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Constructor & Destructor Documentation

pwiz::eharmony::PeptideID_dataFetcher::PeptideID_dataFetcher ( )

inline

Definition at line 50 of file PeptideID_dataFetcher.hpp.

: _rtAdjusted(false) {}

pwiz::eharmony::PeptideID_dataFetcher::PeptideID_dataFetcher	(	std::istream &	is,
		const double &	threshold = .9
	)

pwiz::eharmony::PeptideID_dataFetcher::PeptideID_dataFetcher

(

const std::vector< boost::shared_ptr< SpectrumQuery > > &

sqs

)

pwiz::eharmony::PeptideID_dataFetcher::PeptideID_dataFetcher

(

const MSMSPipelineAnalysis &

mspa

)

pwiz::eharmony::PeptideID_dataFetcher::PeptideID_dataFetcher ( PeptideID_dataFetcher &  )

private

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Member Function Documentation

void pwiz::eharmony::PeptideID_dataFetcher::update

(

const SpectrumQuery &

sq

)

void pwiz::eharmony::PeptideID_dataFetcher::erase

(

const SpectrumQuery &

sq

)

void pwiz::eharmony::PeptideID_dataFetcher::merge

(

const PeptideID_dataFetcher &

that

)

Referenced by testMerge().

size_t pwiz::eharmony::PeptideID_dataFetcher::size ( )

inline

Definition at line 58 of file PeptideID_dataFetcher.hpp.

{ return this->getAllContents().size();}

std::vector<boost::shared_ptr<SpectrumQuery> > pwiz::eharmony::PeptideID_dataFetcher::getAllContents

(

)

const

std::vector<boost::shared_ptr<SpectrumQuery> > pwiz::eharmony::PeptideID_dataFetcher::getSpectrumQueries	(	double	mz,
		double	rt
	)

Bin<SpectrumQuery> pwiz::eharmony::PeptideID_dataFetcher::getBin ( ) const

inline

Definition at line 63 of file PeptideID_dataFetcher.hpp.

Referenced by testMerge().

{ return _bin;}

void pwiz::eharmony::PeptideID_dataFetcher::setRtAdjustedFlag ( const bool &  flag )

inline

Definition at line 64 of file PeptideID_dataFetcher.hpp.

{ _rtAdjusted = flag; }

const bool& pwiz::eharmony::PeptideID_dataFetcher::getRtAdjustedFlag ( ) const

inline

Definition at line 65 of file PeptideID_dataFetcher.hpp.

{ return _rtAdjusted; }

bool pwiz::eharmony::PeptideID_dataFetcher::operator==

(

const PeptideID_dataFetcher &

that

)

bool pwiz::eharmony::PeptideID_dataFetcher::operator!=

(

const PeptideID_dataFetcher &

that

)

PeptideID_dataFetcher pwiz::eharmony::PeptideID_dataFetcher::operator= ( PeptideID_dataFetcher &  )

private

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Member Data Documentation

std::string pwiz::eharmony::PeptideID_dataFetcher::id

Definition at line 70 of file PeptideID_dataFetcher.hpp.

bool pwiz::eharmony::PeptideID_dataFetcher::_rtAdjusted

private

Definition at line 74 of file PeptideID_dataFetcher.hpp.

Bin<SpectrumQuery> pwiz::eharmony::PeptideID_dataFetcher::_bin

private

Definition at line 75 of file PeptideID_dataFetcher.hpp.

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The documentation for this class was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/analysis/eharmony/PeptideID_dataFetcher.hpp