pwiz::eharmony Namespace Reference

Classes
struct	AMTContainer
struct	AMTDatabase
struct	IslandizedDatabase
struct	DatabaseQuery
struct	DataFetcherContainer
struct	DistanceAttribute
struct	NumberOfMS2IDs
struct	RandomDistance
struct	RTDiffDistribution
struct	HammingDistance
struct	WeightedHammingDistance
struct	EditDistance
struct	Exporter
class	Feature2PeptideMatcher
class	Feature_dataFetcher
struct	FeatureSequenced
class	Matcher
struct	KeyLessThan
struct	Matrix
struct	Observation
struct	ModificationStateEntry
struct	PeptideEntry
struct	MSIAMTData
struct	NeighborJoiner
class	PeptideID_dataFetcher
class	PeptideMatcher
struct	SearchNeighborhoodCalculator
struct	NormalDistributionSearch
class	WarpFunction
class	LinearWarpFunction
class	PiecewiseLinearWarpFunction
class	SplineWarpFunction

Typedefs
typedef boost::shared_ptr < SpectrumQuery >	SpectrumQueryPtr
typedef boost::shared_ptr < PeptideID_dataFetcher >	PidfPtr
typedef boost::shared_ptr < Feature_dataFetcher >	FdfPtr
typedef AMTContainer	Entry
typedef boost::shared_ptr < DataFetcherContainer >	DfcPtr
typedef boost::shared_ptr < FeatureSequenced >	FeatureSequencedPtr
typedef std::vector< std::pair < boost::shared_ptr < SpectrumQuery > , boost::shared_ptr < SpectrumQuery > > >	PeptideMatchContainer

Enumerations
enum	DistanceAttributeEnum {   _Hamming, _NumberOfMS2IDs, _Random, _RTDiff,   _WeightedHamming }
enum	WarpFunctionEnum { Default, Linear, PiecewiseLinear }

Functions
void	pairwiseMatchmake (boost::shared_ptr< AMTContainer > a, boost::shared_ptr< AMTContainer > b, bool doFirst=false, bool doSecond=false, WarpFunctionEnum wfe=Default, NormalDistributionSearch snc=NormalDistributionSearch())
boost::shared_ptr< AMTContainer >	generateAMTDatabase (vector< boost::shared_ptr< AMTContainer > > &runs, vector< pair< int, int > > tree, WarpFunctionEnum &wfe, NormalDistributionSearch &snc)

---

Typedef Documentation

typedef boost::shared_ptr<SpectrumQuery> pwiz::eharmony::SpectrumQueryPtr

Definition at line 39 of file DatabaseQuery.hpp.

typedef boost::shared_ptr< PeptideID_dataFetcher > pwiz::eharmony::PidfPtr

Definition at line 38 of file DataFetcherContainer.hpp.

typedef boost::shared_ptr< Feature_dataFetcher > pwiz::eharmony::FdfPtr

Definition at line 39 of file DataFetcherContainer.hpp.

typedef AMTContainer pwiz::eharmony::Entry

Definition at line 33 of file DistanceAttributes.hpp.

typedef boost::shared_ptr< DataFetcherContainer > pwiz::eharmony::DfcPtr

Definition at line 37 of file Exporter.hpp.

typedef boost::shared_ptr<FeatureSequenced> pwiz::eharmony::FeatureSequencedPtr

Definition at line 43 of file Feature_dataFetcher.hpp.

typedef std::vector<std::pair<boost::shared_ptr<SpectrumQuery> , boost::shared_ptr<SpectrumQuery> > > pwiz::eharmony::PeptideMatchContainer

Definition at line 37 of file PeptideMatcher.hpp.

---

Enumeration Type Documentation

enum pwiz::eharmony::DistanceAttributeEnum

Enumerator:

_Hamming
_NumberOfMS2IDs
_Random
_RTDiff
_WeightedHamming

Definition at line 35 of file DistanceAttributes.hpp.

{ _Hamming, _NumberOfMS2IDs, _Random, _RTDiff, _WeightedHamming};

enum pwiz::eharmony::WarpFunctionEnum

Enumerator:

Default
Linear
PiecewiseLinear

Definition at line 38 of file WarpFunction.hpp.

{Default, Linear, PiecewiseLinear};

---

Function Documentation

void pwiz::eharmony::pairwiseMatchmake	(	boost::shared_ptr< AMTContainer >	a,
		boost::shared_ptr< AMTContainer >	b,
		bool	doFirst = false,
		bool	doSecond = false,
		WarpFunctionEnum	wfe = Default,
		NormalDistributionSearch	snc = NormalDistributionSearch()
	)

boost::shared_ptr<AMTContainer> pwiz::eharmony::generateAMTDatabase	(	vector< boost::shared_ptr< AMTContainer > > &	runs,
		vector< pair< int, int > >	tree,
		WarpFunctionEnum &	wfe,
		NormalDistributionSearch &	snc
	)