pwiz::eharmony::SearchNeighborhoodCalculator Struct Reference

#include <SearchNeighborhoodCalculator.hpp>

Inheritance diagram for pwiz::eharmony::SearchNeighborhoodCalculator:

List of all members.

Public Member Functions
	SearchNeighborhoodCalculator ()
	SearchNeighborhoodCalculator (double mzTol, double rtTol)
virtual void	calculateTolerances (const DataFetcherContainer &dfc)
virtual bool	close (const SpectrumQuery &a, const Feature &b) const
virtual double	score (const SpectrumQuery &a, const Feature &b) const
virtual	~SearchNeighborhoodCalculator ()
virtual bool	operator== (const SearchNeighborhoodCalculator &that) const
virtual bool	operator!= (const SearchNeighborhoodCalculator &that) const

Public Attributes
string	_id
double	_mzTol
double	_rtTol

---

Detailed Description

Definition at line 40 of file SearchNeighborhoodCalculator.hpp.

---

Constructor & Destructor Documentation

pwiz::eharmony::SearchNeighborhoodCalculator::SearchNeighborhoodCalculator ( )

inline

Definition at line 42 of file SearchNeighborhoodCalculator.hpp.

: _id("default"), _mzTol(.005), _rtTol(60) {}

pwiz::eharmony::SearchNeighborhoodCalculator::SearchNeighborhoodCalculator ( double  mzTol, double  rtTol  )

inline

Definition at line 43 of file SearchNeighborhoodCalculator.hpp.

References boost::lexical_cast().

: _mzTol(mzTol), _rtTol(rtTol) { _id = ("naive[" + boost::lexical_cast<string>(_mzTol) + "," + boost::lexical_cast<string>(_rtTol) + "]").c_str();}

virtual pwiz::eharmony::SearchNeighborhoodCalculator::~SearchNeighborhoodCalculator ( )

inlinevirtual

Definition at line 53 of file SearchNeighborhoodCalculator.hpp.

{}

---

Member Function Documentation

virtual void pwiz::eharmony::SearchNeighborhoodCalculator::calculateTolerances ( const DataFetcherContainer &  dfc )

inlinevirtual

Definition at line 45 of file SearchNeighborhoodCalculator.hpp.

{}

virtual bool pwiz::eharmony::SearchNeighborhoodCalculator::close ( const SpectrumQuery &  a, const Feature &  b  ) const

virtual

Reimplemented in pwiz::eharmony::NormalDistributionSearch.

Referenced by test().

virtual double pwiz::eharmony::SearchNeighborhoodCalculator::score ( const SpectrumQuery &  a, const Feature &  b  ) const

virtual

Reimplemented in pwiz::eharmony::NormalDistributionSearch.

virtual bool pwiz::eharmony::SearchNeighborhoodCalculator::operator== ( const SearchNeighborhoodCalculator &  that ) const

virtual

virtual bool pwiz::eharmony::SearchNeighborhoodCalculator::operator!= ( const SearchNeighborhoodCalculator &  that ) const

virtual

---

Member Data Documentation

string pwiz::eharmony::SearchNeighborhoodCalculator::_id

Definition at line 49 of file SearchNeighborhoodCalculator.hpp.

double pwiz::eharmony::SearchNeighborhoodCalculator::_mzTol

Definition at line 50 of file SearchNeighborhoodCalculator.hpp.

double pwiz::eharmony::SearchNeighborhoodCalculator::_rtTol

Definition at line 51 of file SearchNeighborhoodCalculator.hpp.

---

The documentation for this struct was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/analysis/eharmony/SearchNeighborhoodCalculator.hpp