Here is a list of all class members with links to the classes they belong to:

- o -

• O : pwiz::proteome::PeptideDatabaseFormula
• object_ : FirstHandler , FifthHandler , RootHandler , SecondHandler
• OBO() : pwiz::data::OBO
• obs_1_distr : pwiz::data::pepxml::DistributionPoint
• obs_2_distr : pwiz::data::pepxml::DistributionPoint
• obs_3_distr : pwiz::data::pepxml::DistributionPoint
• Observation() : pwiz::eharmony::Observation
• observationDuration : pwiz::data::peakdata::Scan , pwiz::data::FrequencyData
• observationDurationEstimatedFromData() : pwiz::data::FrequencyData
• observations : pwiz::eharmony::ModificationStateEntry
• observedHydrophobicity : pwiz::eharmony::Observation
• offset : pwiz::data::Index::Entry , pwiz::proteome::DigestedPeptide
• offset_ : pwiz::proteome::DigestedPeptide
• Ok : pwiz::minimxml::SAXParser::Handler::Status
• open() : pwiz::analysis::RegionTIC , pwiz::util::random_access_compressed_ifstream , pwiz::utility::TabHandler , pwiz::utility::DefaultTabHandler , pwiz::analysis::MetadataReporter , pwiz::analysis::MSDataAnalyzer , pwiz::analysis::MSDataAnalyzerContainer , SimpleAnalyzer , pwiz::analysis::MSDataCache , pwiz::analysis::PepxmlRecordReader , pwiz::analysis::Pseudo2DGel , pwiz::analysis::RegionAnalyzer , pwiz::analysis::RegionSIC , pwiz::analysis::RegionSlice
• opened : SimpleAnalyzer
• OpenPolicy : pwiz::msdata::mz5::Connection_mz5
• operator bool() : pwiz::data::Diff< object_type, config_type, object_result_type > , pwiz::identdata::DelimWriter
• operator T *() : auto_vector< T >::auto_lvalue
• operator!=() : pwiz::data::pepxml::SearchHit , pwiz::data::pepxml::SearchResult , pwiz::data::pepxml::EnzymaticSearchConstraint , pwiz::data::pepxml::AminoAcidModification , pwiz::data::pepxml::SearchSummary , pwiz::data::pepxml::SpectrumQuery , pwiz::data::pepxml::MSMSRunSummary , pwiz::data::pepxml::MSMSPipelineAnalysis , pwiz::data::pepxml::Match , pwiz::data::pepxml::MatchData , pwiz::data::peakdata::Peak , pwiz::data::peakdata::PeakFamily , pwiz::data::peakdata::Scan , pwiz::data::peakdata::Software::Parameter , pwiz::data::peakdata::Software , pwiz::data::peakdata::PeakData , pwiz::data::peakdata::Peakel , pwiz::data::peakdata::Feature , pwiz::eharmony::AMTContainer , pwiz::msdata::SpectrumIterator , pwiz::proteome::Digestion::const_iterator , pwiz::eharmony::IslandizedDatabase::Gaussian , pwiz::chemistry::MassAbundance , pwiz::chemistry::Formula , pwiz::Bin< T > , pwiz::util::CharIndexedVectorIterator< T > , pwiz::util::CharIndexedVectorConstIterator< T > , pwiz::eharmony::Feature2PeptideMatcher , pwiz::util::IntegerSet::Iterator , pwiz::eharmony::Feature_dataFetcher , pwiz::eharmony::FeatureSequenced , pwiz::eharmony::PeptideID_dataFetcher , pwiz::eharmony::PeptideMatcher , pwiz::eharmony::SearchNeighborhoodCalculator , pwiz::data::CVParam , pwiz::data::UserParam , pwiz::data::ParamContainer , pwiz::data::CalibrationParameters , pwiz::data::pepxml::Specificity , pwiz::data::pepxml::SampleEnzyme , pwiz::data::pepxml::SearchDatabase , pwiz::data::pepxml::Q3RatioResult , pwiz::data::pepxml::PeptideProphetResult , pwiz::data::pepxml::AnalysisResult , pwiz::data::pepxml::AlternativeProtein , pwiz::data::pepxml::ModAminoAcidMass , pwiz::data::pepxml::ModificationInfo , pwiz::data::pepxml::Parameter
• operator()() : pwiz::analysis::PrecursorMassFilter , pwiz::proteome::TextWriter , pwiz::analysis::ThresholdFilter , pwiz::proteome::TextWriter , pwiz::data::Diff< object_type, config_type, object_result_type > , pwiz::proteome::TextWriter , pwiz::tradata::TextWriter , pwiz::data::diff_impl::HasID< object_type > , pwiz::tradata::TextWriter , pwiz::data::diff_impl::Same< object_type, config_type > , pwiz::tradata::TextWriter , pwiz::data::diff_impl::SameDeep< object_type, config_type > , pwiz::tradata::TextWriter , pwiz::data::CVParamIs , pwiz::tradata::TextWriter , pwiz::data::CVParamIsChildOf , pwiz::tradata::TextWriter , WriteCVParam , pwiz::tradata::TextWriter , pwiz::identdata::DelimWriter , pwiz::tradata::TextWriter , pwiz::identdata::CVMap , pwiz::tradata::TextWriter , pwiz::identdata::RegexCVMap , pwiz::tradata::TextWriter , pwiz::identdata::StringMatchCVMap , pwiz::tradata::TextWriter , pwiz::identdata::StringMatchCVMap , pwiz::tradata::TextWriter , pwiz::identdata::CVIDMatchCVMap , pwiz::tradata::TextWriter , pwiz::identdata::CVIDMatchCVMap , IsWiffFile , Is_T2D_Directory , pwiz::identdata::id_p< T > , IsDirectory , pwiz::identdata::software_p , IsRawFile , IsRawData , pwiz::identdata::sequence_p , OneMinusAbs , pwiz::math::Parabola , pwiz::identdata::seq_p , PrintAttribute , pwiz::util::TestPathPredicate , pwiz::identdata::dbsequence_p , pwiz::identdata::organization_p , pwiz::identdata::person_p , pwiz::identdata::Pep2MzIdent , EnzymePtr_specificity , EnzymePtr_missedCleavages , pwiz::identdata::TextWriter , DeletePtr< T > , pwiz::identdata::TextWriter , pwiz::analysis::SpectrumDataFilter , pwiz::identdata::TextWriter , pwiz::analysis::ChromatogramDataFilter , pwiz::identdata::TextWriter , pwiz::SecondIs< T > , pwiz::identdata::TextWriter , pwiz::IsObject< T > , pwiz::identdata::TextWriter , IsInt , pwiz::identdata::TextWriter , pwiz::eharmony::DistanceAttribute , pwiz::identdata::TextWriter , PointsToSame , pwiz::identdata::TextWriter , IsFS , pwiz::identdata::TextWriter , pwiz::eharmony::KeyLessThan , pwiz::identdata::TextWriter , IsSQ , pwiz::identdata::TextWriter , pwiz::eharmony::WarpFunction , pwiz::identdata::TextWriter , pwiz::eharmony::LinearWarpFunction , pwiz::identdata::TextWriter , pwiz::eharmony::PiecewiseLinearWarpFunction , pwiz::identdata::TextWriter , pwiz::eharmony::SplineWarpFunction , pwiz::identdata::TextWriter , pwiz::frequency::DerivativeTest::VectorFunction< value_type > , pwiz::identdata::TextWriter , pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice< value_type > , pwiz::identdata::TextWriter , pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice< value_type > , pwiz::identdata::TextWriter , pwiz::frequency::DerivativeTest::AdaptedErrorFunction< value_type > , pwiz::identdata::TextWriter , pwiz::frequency::DerivativeTest::AdaptedErrorDerivative< value_type > , pwiz::identdata::TextWriter , pwiz::frequency::MagnitudeLorentzian , pwiz::msdata::TextWriter , pwiz::frequency::ParametrizedFunction< value_type > , pwiz::msdata::TextWriter , pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction , pwiz::msdata::TextWriter , ParametrizedCosine , pwiz::msdata::TextWriter , pwiz::frequency::TruncatedLorentzian , pwiz::msdata::TextWriter , mzrtEqual , pwiz::msdata::TextWriter , SetRetentionTime , pwiz::msdata::TextWriter , pwiz::analysis::RTMatches_Any< T > , pwiz::msdata::TextWriter , pwiz::analysis::RTMatches_Contains< T > , pwiz::msdata::TextWriter , pwiz::analysis::RTMatches_IsContainedIn< T > , pwiz::msdata::TextWriter , MyPred , pwiz::msdata::TextWriter , pwiz::peptideid::nativeID_less , pwiz::msdata::TextWriter , pwiz::peptideid::location_less , pwiz::msdata::TextWriter , pwiz::peptideid::FlatRecordBuilder , pwiz::msdata::TextWriter , pwiz::peptideid::FlatRecordBuilder , pwiz::msdata::TextWriter , pwiz::peptideid::MSInspectRecordBuilder , pwiz::msdata::TextWriter , pwiz::peptideid::MSInspectRecordBuilder , pwiz::msdata::TextWriter , pwiz::analysis::MS2Deisotoper , pwiz::msdata::TextWriter , pwiz::analysis::MS2NoiseFilter , DigestedPeptideLessThan , pwiz::proteome::TextWriter
• operator*() : pwiz::msdata::SpectrumIterator , pwiz::proteome::Digestion::const_iterator , pwiz::util::CharIndexedVectorIterator< T > , pwiz::util::CharIndexedVectorConstIterator< T > , pwiz::util::IntegerSet::Iterator
• operator*=() : pwiz::chemistry::Formula
• operator+() : pwiz::identdata::ReaderList , pwiz::msdata::ReaderList , pwiz::proteome::ReaderList , pwiz::tradata::ReaderList , pwiz::identdata::ReaderList
• operator++() : pwiz::msdata::SpectrumIterator , pwiz::proteome::Digestion::const_iterator , pwiz::util::CharIndexedVectorIterator< T > , pwiz::util::CharIndexedVectorConstIterator< T > , pwiz::util::IntegerSet::Iterator , pwiz::util::CharIndexedVectorIterator< T > , pwiz::msdata::SpectrumIterator
• operator+=() : pwiz::identdata::ReaderList , pwiz::data::FrequencyData , pwiz::msdata::ReaderList , pwiz::proteome::ReaderList , pwiz::tradata::ReaderList , pwiz::chemistry::Formula , pwiz::minimxml::SAXParser::saxstring , pwiz::util::CharIndexedVectorIterator< T > , pwiz::util::CharIndexedVectorConstIterator< T > , pwiz::minimxml::SAXParser::saxstring , pwiz::tradata::ReaderList
• operator-() : pwiz::util::CharIndexedVectorIterator< T > , pwiz::util::CharIndexedVectorConstIterator< T >
• operator--() : pwiz::util::CharIndexedVectorIterator< T > , pwiz::util::CharIndexedVectorConstIterator< T >
• operator-=() : pwiz::chemistry::Formula , pwiz::util::CharIndexedVectorIterator< T > , pwiz::util::CharIndexedVectorConstIterator< T >
• operator->() : pwiz::msdata::SpectrumIterator , pwiz::proteome::Digestion::const_iterator , auto_vector< T >::auto_lvalue
• operator<() : pwiz::data::Term , pwiz::proteome::ModificationList , pwiz::proteome::ModificationMap , pwiz::proteome::Peptide , pwiz::util::CharIndexedVectorConstIterator< T > , pwiz::util::CharIndexedVectorIterator< T > , pwiz::proteome::Modification
• operator<< : pwiz::analysis::PepxmlRecordReader , pwiz::chemistry::IsotopeTable , pwiz::util::IntegerSet::Interval , pwiz::util::IntegerSet
• operator=() : pwiz::minimxml::XMLWriter , pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc > , pwiz::tradata::Serializer_traML , pwiz::minimxml::SAXParser::saxstring , pwiz::tradata::TraData , pwiz::chemistry::IsotopeTable , pwiz::chemistry::Formula , pwiz::msdata::Serializer_MGF , pwiz::proteome::ProteinListCache , pwiz::msdata::Serializer_MSn , pwiz::proteome::DigestedPeptide , pwiz::msdata::Serializer_mzML , auto_vector< T > , pwiz::eharmony::DataFetcherContainer , pwiz::data::pepxml::Match , pwiz::msdata::RAMPAdapter , pwiz::analysis::Pseudo2DGel , pwiz::analysis::RegionAnalyzer , pwiz::analysis::PeakFamilyDetectorFT , pwiz::msdata::mz5::ComponentsMZ5 , pwiz::msdata::mz5::BinaryDataMZ5 , pwiz::math::Stats , pwiz::msdata::mz5::PrecursorListMZ5 , pwiz::msdata::mz5::ProcessingMethodMZ5 , pwiz::msdata::mz5::ScanSettingMZ5 , pwiz::msdata::mz5::RefListMZ5 , pwiz::identdata::Serializer_pepXML , pwiz::msdata::mz5::ContVocabMZ5 , pwiz::msdata::mz5::Configuration_mz5 , pwiz::msdata::Run , pwiz::msdata::mz5::ComponentMZ5 , pwiz::msdata::mz5::ComponentListMZ5 , pwiz::data::FrequencyData , pwiz::msdata::MSData , pwiz::msdata::mz5::FileInformationMZ5 , pwiz::msdata::mz5::ParamListMZ5 , pwiz::msdata::mz5::UserParamMZ5 , pwiz::msdata::mz5::CVParamMZ5 , pwiz::analysis::PrecursorRecalculatorDefault , pwiz::eharmony::Feature_dataFetcher , pwiz::eharmony::FeatureSequenced , pwiz::msdata::mz5::ParamListsMZ5 , pwiz::msdata::mz5::ParamGroupMZ5 , pwiz::msdata::mz5::SampleMZ5 , pwiz::analysis::FeatureDetectorSimple , pwiz::msdata::mz5::RefMZ5 , pwiz::analysis::ProteinList_DecoyGenerator , pwiz::analysis::ProteinList_Filter , pwiz::msdata::mz5::CVRefMZ5 , pwiz::data::CVTranslator , pwiz::data::UserParam , pwiz::msdata::LegacyAdapter_Software , pwiz::analysis::SpectrumList_PrecursorRecalculator , pwiz::identdata::Serializer_protXML , pwiz::data::peakdata::FeatureFile , pwiz::msdata::BinaryDataEncoder , pwiz::msdata::LegacyAdapter_Instrument , pwiz::identdata::Serializer_Text , pwiz::analysis::SpectrumList_PrecursorRefine , pwiz::identdata::Serializer_mzIdentML , pwiz::analysis::SpectrumList_Sorter , pwiz::analysis::SpectrumList_MZWindow , pwiz::msdata::mz5::SourceFileMZ5 , pwiz::msdata::mz5::SoftwareMZ5 , pwiz::analysis::SpectrumList_Filter , pwiz::eharmony::PeptideID_dataFetcher , pwiz::msdata::mz5::InstrumentConfigurationMZ5 , pwiz::analysis::MSDataCache , pwiz::msdata::mz5::ScanListMZ5 , pwiz::msdata::mz5::ScansMZ5 , pwiz::msdata::mz5::SpectrumMZ5 , auto_vector< T >::auto_lvalue , pwiz::msdata::mz5::ProcessingMethodListMZ5 , pwiz::msdata::Serializer_mz5 , pwiz::msdata::mz5::DataProcessingMZ5 , pwiz::proteome::Peptide , pwiz::proteome::ProteomeData , pwiz::msdata::mz5::PrecursorMZ5 , pwiz::chemistry::IsotopeCalculator , pwiz::msdata::mz5::ScanMZ5 , pwiz::msdata::mz5::ChromatogramMZ5 , pwiz::util::IterationListenerRegistry , pwiz::util::SHA1Calculator , pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc > , pwiz::msdata::mz5::RunMZ5 , pwiz::msdata::SpectrumIterator , pwiz::msdata::SpectrumListCache , pwiz::msdata::Serializer_mzXML , pwiz::proteome::Modification , pwiz::proteome::ModificationMap , pwiz::proteome::Reader_FASTA , pwiz::proteome::Serializer_FASTA , pwiz::chemistry::IsotopeEnvelopeEstimator , pwiz::minimxml::SAXParser::Handler::Attributes
• operator==() : pwiz::data::pepxml::Specificity , pwiz::data::pepxml::AminoAcidModification , pwiz::data::pepxml::Q3RatioResult , pwiz::data::peakdata::PeakData , pwiz::data::peakdata::Peak , pwiz::minimxml::SAXParser::saxstring , pwiz::proteome::DigestedPeptide , pwiz::data::pepxml::MSMSRunSummary , pwiz::proteome::Peptide , pwiz::data::pepxml::SearchSummary , pwiz::eharmony::PeptideID_dataFetcher , pwiz::data::pepxml::SampleEnzyme , pwiz::data::pepxml::EnzymaticSearchConstraint , pwiz::msdata::Product , pwiz::chemistry::MassAbundance , pwiz::data::pepxml::SearchDatabase , pwiz::data::peakdata::Scan , pwiz::data::pepxml::MSMSPipelineAnalysis , pwiz::data::pepxml::SearchResult , pwiz::eharmony::SearchNeighborhoodCalculator , pwiz::identdata::StringMatchCVMap , pwiz::cv::CV , pwiz::eharmony::PeptideMatcher , pwiz::eharmony::Feature_dataFetcher , pwiz::data::peakdata::Feature , pwiz::data::pepxml::SearchHit , pwiz::eharmony::FeatureSequenced , pwiz::msdata::TimeIntensityPair , pwiz::Bin< T > , pwiz::identdata::StringMatchCVMap , pwiz::data::ParamContainer , pwiz::data::pepxml::ModAminoAcidMass , pwiz::data::CalibrationParameters , pwiz::data::pepxml::AnalysisResult , pwiz::data::pepxml::MatchData , pwiz::proteome::Digestion::const_iterator , pwiz::minimxml::SAXParser::saxstring , pwiz::proteome::ModificationList , pwiz::data::peakdata::Peakel , pwiz::proteome::ModificationMap , pwiz::proteome::Modification , pwiz::data::peakdata::PeakFamily , pwiz::msdata::SpectrumIterator , pwiz::data::pepxml::Match , pwiz::util::IntegerSet::Iterator , pwiz::data::pepxml::PeptideProphetResult , pwiz::chemistry::Formula , pwiz::identdata::CVIDMatchCVMap , pwiz::data::pepxml::SpectrumQuery , pwiz::identdata::CVMap , pwiz::eharmony::IslandizedDatabase::Gaussian , pwiz::eharmony::AMTContainer , pwiz::eharmony::Feature2PeptideMatcher , pwiz::data::CVParam , pwiz::data::UserParam , pwiz::msdata::MZIntensityPair , pwiz::data::peakdata::Software::Parameter , pwiz::data::pepxml::ModificationInfo , pwiz::calibration::Calibrator::Measurement , pwiz::identdata::CVIDMatchCVMap , pwiz::data::pepxml::Parameter , pwiz::data::peakdata::Software , pwiz::data::pepxml::AlternativeProtein
• operator>> : pwiz::util::IntegerSet::Interval
• operator[]() : pwiz::util::CharIndexedVector< T > , pwiz::minimxml::SAXParser::saxstring , pwiz::chemistry::Formula , auto_vector< T > , pwiz::util::CharIndexedVector< T > , auto_vector< T > , pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc > , pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc > , pwiz::chemistry::Formula , pwiz::proteome::ModificationMap , pwiz::math::OrderedPairContainerRef
• optimal_buffer_size() : pwiz::minimxml::basic_charcounter< Ch >
• options : pwiz::data::pepxml::PeptideProphetSummary
• Orbitrap : pwiz::data::CalibrationParameters
• order : pwiz::msdata::mz5::ComponentMZ5 , pwiz::msdata::ProcessingMethod , pwiz::msdata::Component , pwiz::msdata::mz5::ProcessingMethodMZ5
• OrderedPair() : pwiz::math::OrderedPair
• OrderedPairContainerRef() : pwiz::math::OrderedPairContainerRef
• ordinate_type : pwiz::math::MatchedFilter::KernelTraits< Kernel > , pwiz::math::MatchedFilter::SampledData< space_type > , pwiz::math::MatchedFilter::ProductSpace< X, Y >
• Organization() : pwiz::identdata::Organization
• orientation : TestThresholder , pwiz::analysis::ThresholdFilter
• Orientation_LeastIntense : pwiz::analysis::ThresholdFilter
• Orientation_MostIntense : pwiz::analysis::ThresholdFilter
• originalResidue : pwiz::identdata::SubstitutionModification
• origScore : pwiz::analysis::PepxmlRecordReader::record
• os_ : pwiz::msdata::TextWriter , pwiz::identdata::DelimWriter , WriteCVParam , pwiz::proteome::TextWriter , pwiz::util::SHA1_ostream , pwiz::identdata::TextWriter , PrintEventHandler , pwiz::tradata::TextWriter , PrintAttribute
• osDump : pwiz::analysis::RegionAnalyzer::Config
• otherRelations : pwiz::cv::CVTermInfo
• output() : pwiz::calibration::ErrorEstimator , pwiz::calibration::MassSpread
• output_height : pwiz::analysis::Pseudo2DGel::Config
• output_width : pwiz::analysis::Pseudo2DGel::Config
• outputDirectory : pwiz::calibration::CalibratorTrial::Configuration , pwiz::frequency::FrequencyEstimatorPhysicalModel::Config , pwiz::frequency::TruncatedLorentzianEstimator , pwiz::analysis::MSDataAnalyzer::DataInfo
• outputIntensityArray : TestDeisotoper , TestMS2Denoise , TestETDMassFilter , TestThresholder
• outputMZArray : TestDeisotoper , TestETDMassFilter , TestMS2Denoise , TestThresholder
• outputObserver : pwiz::minimxml::XMLWriter::Config
• outputSamples() : pwiz::frequency::TruncatedLorentzian
• outputState() : pwiz::calibration::CalibratorLog
• override_ : pwiz::analysis::SpectrumList_ChargeStateCalculator
• overrideExistingChargeState : TestChargeStateCalculator