SpectrumList wrapper that recalculates precursor info on spectrum() requests. More...
#include <SpectrumList_PrecursorRefine.hpp>
Inheritance diagram for pwiz::analysis::SpectrumList_PrecursorRefine:
Classes | |
| struct | PrecursorInfo |
Public Member Functions | |
| SpectrumList_PrecursorRefine (const msdata::MSData &msd) | |
| constructor needs the full MSData object for instrument info; SpectrumList_PrecursorRefine holds a reference to the original SpectrumListPtr | |
| ~SpectrumList_PrecursorRefine () | |
SpectrumList interface | |
| virtual msdata::SpectrumPtr | spectrum (size_t index, bool getBinaryData=false) const |
| retrieve a spectrum by index | |
 Public Member Functions inherited from pwiz::msdata::SpectrumListWrapper | |
| SpectrumListWrapper (const SpectrumListPtr &inner) | |
| virtual size_t | size () const |
| returns the number of spectra | |
| virtual bool | empty () const |
| returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL) | |
| virtual const SpectrumIdentity & | spectrumIdentity (size_t index) const |
| access to a spectrum index | |
| virtual SpectrumPtr | spectrum (size_t index, DetailLevel detailLevel) const |
| retrieve a spectrum by index | |
| virtual const boost::shared_ptr< const DataProcessing > | dataProcessingPtr () const |
| returns the data processing affecting spectra retrieved through this interface | |
| Public Member Functions inherited from pwiz::msdata::SpectrumList | |
| virtual size_t | find (const std::string &id) const |
| find id in the spectrum index (returns size() on failure) | |
| virtual IndexList | findNameValue (const std::string &name, const std::string &value) const |
| find all spectrum indexes with specified name/value pair | |
| virtual IndexList | findSpotID (const std::string &spotID) const |
| find all spectrum indexes with spotID (returns empty vector on failure) | |
| virtual SpectrumPtr | spectrum (const SpectrumPtr &seed, bool getBinaryData) const |
| get a copy of the seed spectrum, optionally with its binary data populated this is useful for formats like mzML that can delay loading of binary data | |
| virtual | ~SpectrumList () |
Private Member Functions | |
| double | RefineMassVal (double initialEstimate, size_t index) const |
| SpectrumList_PrecursorRefine (SpectrumList_PrecursorRefine &) | |
| SpectrumList_PrecursorRefine & | operator= (SpectrumList_PrecursorRefine &) |
Private Attributes | |
| boost::shared_ptr< Impl > | impl_ |
| int | numRefined |
| int | numTotal |
Additional Inherited Members | |
| Protected Attributes inherited from pwiz::msdata::SpectrumListWrapper | |
| SpectrumListPtr | inner_ |
| DataProcessingPtr | dp_ |
Detailed Description
SpectrumList wrapper that recalculates precursor info on spectrum() requests.
Definition at line 37 of file SpectrumList_PrecursorRefine.hpp.
Constructor & Destructor Documentation
| pwiz::analysis::SpectrumList_PrecursorRefine::SpectrumList_PrecursorRefine | ( | const msdata::MSData & | msd | ) |
constructor needs the full MSData object for instrument info; SpectrumList_PrecursorRefine holds a reference to the original SpectrumListPtr
| pwiz::analysis::SpectrumList_PrecursorRefine::~SpectrumList_PrecursorRefine | ( | ) |
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private |
Member Function Documentation
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virtual |
retrieve a spectrum by index
- binary data arrays will be provided if (getBinaryData == true);
- client may assume the underlying Spectrum* is valid
Implements pwiz::msdata::SpectrumListWrapper.
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private |
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private |
Member Data Documentation
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private |
Definition at line 63 of file SpectrumList_PrecursorRefine.hpp.
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mutableprivate |
Definition at line 68 of file SpectrumList_PrecursorRefine.hpp.
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mutableprivate |
Definition at line 69 of file SpectrumList_PrecursorRefine.hpp.
The documentation for this class was generated from the following file:
- /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp
