pwiz::proteome::TextWriter Class Reference

#include <TextWriter.hpp>

List of all members.

Public Member Functions
	TextWriter (std::ostream &os, int depth=0)
TextWriter	child ()
TextWriter &	operator() (const std::string &text)
template<typename object_type >
TextWriter &	operator() (const std::string &label, const std::vector< object_type > &v)
TextWriter &	operator() (const ProteomeData &pd, bool metadata_only=false)
TextWriter &	operator() (const Protein &p)
TextWriter &	operator() (const ProteinList &proteinList, bool metadata_only=false)
template<typename object_type >
TextWriter &	operator() (const boost::shared_ptr< object_type > &p)

Private Attributes
std::ostream &	os_
int	depth_
std::string	indent_

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Detailed Description

Definition at line 39 of file TextWriter.hpp.

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Constructor & Destructor Documentation

pwiz::proteome::TextWriter::TextWriter ( std::ostream &  os, int  depth = 0  )

inline

Definition at line 43 of file TextWriter.hpp.

    :   os_(os), depth_(depth), indent_(depth*2, ' ')
    {}

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Member Function Documentation

TextWriter pwiz::proteome::TextWriter::child ( )

inline

Definition at line 47 of file TextWriter.hpp.

References os_.

{return TextWriter(os_, depth_+1);}

TextWriter& pwiz::proteome::TextWriter::operator() ( const std::string &  text )

inline

Definition at line 49 of file TextWriter.hpp.

References os_.

    {
        os_ << indent_ << text << std::endl;
        return *this;
    }

template<typename object_type >

TextWriter& pwiz::proteome::TextWriter::operator() ( const std::string &  label, const std::vector< object_type > &  v  )

inline

Definition at line 56 of file TextWriter.hpp.

    {
        (*this)(label);
        for_each(v.begin(), v.end(), child());
        return *this;
    }

TextWriter& pwiz::proteome::TextWriter::operator() ( const ProteomeData &  pd, bool  metadata_only = false  )

inline

Definition at line 64 of file TextWriter.hpp.

References pwiz::proteome::ProteomeData::id, and pwiz::proteome::ProteomeData::proteinListPtr.

    {
        (*this)("ProteomeData:");
        child()
            ("id: " + pd.id);

        if (pd.proteinListPtr.get())
            child()(*pd.proteinListPtr, metadata_only);

        return *this;
    }

TextWriter& pwiz::proteome::TextWriter::operator() ( const Protein &  p )

inline

Definition at line 76 of file TextWriter.hpp.

References pwiz::proteome::Protein::description, pwiz::proteome::Protein::id, pwiz::proteome::Protein::index, and pwiz::proteome::Peptide::sequence().

    {
        (*this)("protein:");
        child()
            ("id: " + p.id)
            ("index: " + p.index)
            ("description: " + p.description)
            ("sequence: " + p.sequence().substr(0, 10));
        return *this;
    }

TextWriter& pwiz::proteome::TextWriter::operator() ( const ProteinList &  proteinList, bool  metadata_only = false  )

inline

Definition at line 87 of file TextWriter.hpp.

References pwiz::proteome::ProteinList::protein(), and pwiz::proteome::ProteinList::size().

    {
        std::string text("proteinList (" + boost::lexical_cast<std::string>(proteinList.size()) + " proteins)");
        if (!metadata_only)
            text += ":";

        (*this)(text);

        if (!metadata_only)
            for (size_t index = 0; index < proteinList.size(); ++index)
                child()
                    (*proteinList.protein(index, true));
        return *this;
    }

template<typename object_type >

TextWriter& pwiz::proteome::TextWriter::operator() ( const boost::shared_ptr< object_type > &  p )

inline

Definition at line 104 of file TextWriter.hpp.

    {
        return p.get() ? (*this)(*p) : *this;
    }

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Member Data Documentation

std::ostream& pwiz::proteome::TextWriter::os_

private

Definition at line 111 of file TextWriter.hpp.

int pwiz::proteome::TextWriter::depth_

private

Definition at line 112 of file TextWriter.hpp.

std::string pwiz::proteome::TextWriter::indent_

private

Definition at line 113 of file TextWriter.hpp.

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The documentation for this class was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/proteome/TextWriter.hpp