pwiz::proteome::ProteinList Class Reference

#include <ProteomeData.hpp>

Inheritance diagram for pwiz::proteome::ProteinList:

List of all members.

Public Member Functions
virtual size_t	size () const =0
virtual ProteinPtr	protein (size_t index, bool getSequence=true) const =0
virtual bool	empty () const
virtual size_t	find (const std::string &id) const
virtual IndexList	findKeyword (const std::string &keyword, bool caseSensitive=true) const
virtual	~ProteinList ()

---

Detailed Description

Definition at line 55 of file ProteomeData.hpp.

---

Constructor & Destructor Documentation

virtual pwiz::proteome::ProteinList::~ProteinList ( )

inlinevirtual

Definition at line 69 of file ProteomeData.hpp.

{}

---

Member Function Documentation

virtual size_t pwiz::proteome::ProteinList::size ( ) const

pure virtual

Implemented in pwiz::proteome::ProteinListSimple, pwiz::analysis::ProteinList_DecoyGenerator, pwiz::analysis::ProteinList_Filter, FilterWrapper, FilterWrapper, and pwiz::proteome::ProteinListWrapper.

Referenced by pwiz::proteome::TextWriter::operator()(), printProteinList(), and testProteinListSimple().

virtual ProteinPtr pwiz::proteome::ProteinList::protein ( size_t  index, bool  getSequence = true  ) const

pure virtual

Implemented in pwiz::proteome::ProteinListSimple, pwiz::analysis::ProteinList_DecoyGenerator, pwiz::analysis::ProteinList_Filter, pwiz::proteome::ProteinListCache, FilterWrapper, and pwiz::proteome::ProteinListWrapper.

Referenced by pwiz::proteome::TextWriter::operator()(), printProteinList(), and testProteinListSimple().

virtual bool pwiz::proteome::ProteinList::empty ( ) const

virtual

Reimplemented in pwiz::proteome::ProteinListSimple.

virtual size_t pwiz::proteome::ProteinList::find ( const std::string &  id ) const

virtual

Reimplemented in pwiz::analysis::ProteinList_DecoyGenerator, and pwiz::proteome::ProteinListCache.

Referenced by testProteinListSimple().

virtual IndexList pwiz::proteome::ProteinList::findKeyword ( const std::string &  keyword, bool  caseSensitive = true  ) const

virtual

Referenced by testProteinListSimple().

---

The documentation for this class was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/proteome/ProteomeData.hpp