Here is a list of all class members with links to the classes they belong to:
- m -
- m_block
: CSHA1
- m_buffer
: CSHA1
- m_count
: CSHA1
- m_digest
: CSHA1
- m_guts
: pwiz_RAMPAdapter
- m_ions
: pwiz::analysis::PepxmlRecordReader::record
- m_itr
: pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
- m_reserved0
: CSHA1
- m_reserved1
: CSHA1
- m_state
: CSHA1
- m_workspace
: CSHA1
- magnitude
: TestDatum
- MagnitudeLorentzian()
: pwiz::frequency::MagnitudeLorentzian
- magnitudeSample()
: pwiz::data::FrequencyData
- Major()
: pwiz::analysis::Version
, pwiz::identdata::Version
, pwiz::msdata::Version
, pwiz::proteome::Version
, pwiz::tradata::Version
, pwiz::Version
- majorVersion
: pwiz::msdata::mz5::FileInformationMZ5Data
- makeDelimitedListString()
: pwiz::identdata::TextWriter
- makeDelimitedRefListString()
: pwiz::identdata::TextWriter
- makeMS2_
: pwiz::analysis::SpectrumList_ChargeStateCalculator
- managemem
: pwiz::minimxml::SAXParser::Handler::Attributes
- manufacturer
: InstrumentStruct
, pwiz::msdata::LegacyAdapter_Instrument
- manufacturerAndModel()
: pwiz::msdata::LegacyAdapter_Instrument
- Map
: pwiz::chemistry::Formula
- mapped_type
: pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- markupShape
: pwiz::analysis::Pseudo2DGel::Config
- MarkupShape
: pwiz::analysis::Pseudo2DGel
- MascotReader()
: pwiz::identdata::MascotReader
- mass
: pwiz::calibration::MassDatabase::Entry
, pwiz::calibration::MassSpread::Pair
, pwiz::proteome::PeptideDatabaseRecord
, pwiz::identdata::Residue
, pwiz::data::pepxml::ModAminoAcidMass
, pwiz::data::pepxml::AminoAcidModification
, pwiz::chemistry::MassAbundance
, pwiz::chemistry::detail::Isotope
, pwiz::utility::MSIHandler::Record
- mass_lower_bound()
: pwiz::proteome::PeptideDatabase
- mass_upper_bound()
: pwiz::proteome::PeptideDatabase
- MassAbundance()
: pwiz::chemistry::MassAbundance
- massAnalyzerType
: pwiz::msdata::SpectrumInfo
- massAnalyzerTypeAbbreviation()
: pwiz::msdata::SpectrumInfo
- massDatabase
: pwiz::calibration::CalibratorTrial::Configuration
- massDelta
: pwiz::identdata::SearchModification
- massDeviation
: pwiz::data::pepxml::Match
- massDiff
: pwiz::data::pepxml::SearchHit
, pwiz::data::pepxml::AminoAcidModification
- massMax
: pwiz::eharmony::IslandizedDatabase::Island
- massMean
: pwiz::eharmony::IslandizedDatabase::Island
- massMedian
: pwiz::eharmony::IslandizedDatabase::Island
- massMin
: pwiz::eharmony::IslandizedDatabase::Island
- massSpread()
: pwiz::calibration::Calibrator
, pwiz::calibration::ErrorEstimator
- MassTable()
: pwiz::identdata::MassTable
- massTable
: pwiz::identdata::SpectrumIdentificationProtocol
- massTablePtr
: pwiz::identdata::SpectrumIdentificationItem
- mat()
: LU
- mat_
: LU
- match()
: pwiz::identdata::RegexCVMap
- Match()
: pwiz::data::pepxml::Match
- MatchData()
: pwiz::data::pepxml::MatchData
- Matcher()
: pwiz::eharmony::Matcher
- matches
: pwiz::data::pepxml::MatchData
- matchingTolerance
: pwiz::analysis::MS2Deisotoper::Config
, pwiz::analysis::PrecursorMassFilter::Config
, TestETDMassFilter
- matchName()
: pwiz::minimxml::SAXParser::Handler::Attributes::attribute
- Matrix()
: pwiz::eharmony::Matrix
- matrix_type
: pwiz::math::Stats
- max
: pwiz::analysis::RegionAnalyzer::SpectrumStats
, pwiz::data::FrequencyData
- MAX_ID
: pwiz::data::Term
- max_num_items
: pwiz::util::mru_list< Item, KeyExtractor >
- max_size()
: pwiz::util::mru_list< Item, KeyExtractor >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- maxCharge
: pwiz::analysis::PeakelPicker_Basic::Config
- maxCharge_
: pwiz::analysis::SpectrumList_ChargeStateCalculator
- maximumLength
: pwiz::proteome::Digestion::Config
- maximumMissedCleavages
: pwiz::proteome::Digestion::Config
- maxIntensity
: pwiz::data::peakdata::Peakel
- maxMultipleCharge
: TestChargeStateCalculator
- maxNumInternalCleavages
: pwiz::data::pepxml::EnzymaticSearchConstraint
- md
: TestModifiedPeptide
- mean
: pwiz::analysis::Noise
, pwiz::data::FrequencyData
, pwiz::math::Stats
- mean_peak_mz
: pwiz::analysis::RegionAnalyzer::Stats
- meanOuterProduct()
: pwiz::math::Stats
- meanSquare()
: pwiz::data::FrequencyData
- Measure()
: pwiz::identdata::Measure
- Measurement()
: pwiz::calibration::Calibrator::Measurement
- measurement()
: pwiz::calibration::Calibrator
, pwiz::calibration::MassSpread
- measurementCount()
: pwiz::calibration::Calibrator
, pwiz::calibration::ErrorEstimator
- measurementError
: pwiz::calibration::CalibratorTrial::Configuration
- measurements
: pwiz::calibration::CalibratorTrial::Configuration
- measurePtr
: pwiz::identdata::FragmentArray
- median
: pwiz::utility::MSIHandler::Record
- medianObservedHydrophobicity
: pwiz::eharmony::ModificationStateEntry
, pwiz::eharmony::PeptideEntry
- medianPeptideProphet
: pwiz::eharmony::ModificationStateEntry
, pwiz::eharmony::PeptideEntry
- MemoryIndex()
: pwiz::data::MemoryIndex
- MemoryMRUCache()
: pwiz::msdata::MemoryMRUCache< PtrType, KeyExtractor >
- merge()
: pwiz::eharmony::AMTContainer
, pwiz::eharmony::Feature_dataFetcher
, pwiz::eharmony::PeptideID_dataFetcher
- mergedResultEndScanNum
: ScanHeaderStruct
- mergedResultScanNum
: ScanHeaderStruct
- mergedResultStartScanNum
: ScanHeaderStruct
- mergedScan
: ScanHeaderStruct
- message
: pwiz::util::IterationListener::UpdateMessage
- midInitials
: pwiz::identdata::Person
- min_prob
: pwiz::data::pepxml::RocDataPoint
, pwiz::data::pepxml::ErrorPoint
, pwiz::data::pepxml::PeptideProphetSummary
- minCharge
: pwiz::analysis::PeakelPicker_Basic::Config
- minCharge_
: pwiz::analysis::SpectrumList_ChargeStateCalculator
- minDistance
: pwiz::identdata::Enzyme
- mine_
: pwiz::data::diff_impl::Same< object_type, config_type >
, pwiz::data::diff_impl::SameDeep< object_type, config_type >
- minimumLength
: pwiz::proteome::Digestion::Config
- minimumSpecificity
: pwiz::proteome::Digestion::Config
- minMonoisotopicPeakelSize
: pwiz::analysis::PeakelPicker_Basic::Config
- minMultipleCharge
: TestChargeStateCalculator
- minNumTermini
: pwiz::data::pepxml::EnzymaticSearchConstraint
- Minor()
: pwiz::analysis::Version
, pwiz::identdata::Version
, pwiz::msdata::Version
, pwiz::proteome::Version
, pwiz::tradata::Version
, pwiz::Version
- minorVersion
: pwiz::msdata::mz5::FileInformationMZ5Data
- minPeakelCount
: pwiz::analysis::PeakelPicker_Basic::Config
- minSpace
: pwiz::data::pepxml::Specificity
- missedCleavages
: pwiz::identdata::Enzyme
, pwiz::proteome::DigestedPeptide
- missedCleavages_
: pwiz::proteome::DigestedPeptide
- mixture_model
: pwiz::data::pepxml::PeptideProphetSummary
- mkdir()
: pwiz::msaux::Path
- modAminoAcidMass
: pwiz::data::pepxml::ModificationInfo
- ModAminoAcidMass()
: pwiz::data::pepxml::ModAminoAcidMass
- Mode
: pwiz::analysis::SpectrumList_ZeroSamplesFilter
- mode()
: pwiz::msdata::MemoryMRUCache< PtrType, KeyExtractor >
, pwiz::proteome::ProteinListCache
- mode_
: pwiz::proteome::ProteinListCache
, pwiz::analysis::SpectrumList_PeakPicker
, pwiz::analysis::SpectrumList_ZeroSamplesFilter
, pwiz::msdata::MemoryMRUCache< PtrType, KeyExtractor >
- Mode_AddMissingZeros
: pwiz::analysis::SpectrumList_ZeroSamplesFilter
- Mode_RemoveExtraZeros
: pwiz::analysis::SpectrumList_ZeroSamplesFilter
- model()
: pwiz::msdata::LegacyAdapter_Instrument
, InstrumentStruct
- model_1_neg_distr
: pwiz::data::pepxml::DistributionPoint
- model_1_pos_distr
: pwiz::data::pepxml::DistributionPoint
- model_2_neg_distr
: pwiz::data::pepxml::DistributionPoint
- model_2_pos_distr
: pwiz::data::pepxml::DistributionPoint
- model_3_neg_distr
: pwiz::data::pepxml::DistributionPoint
- model_3_pos_distr
: pwiz::data::pepxml::DistributionPoint
- Modification()
: pwiz::proteome::Modification
- modification
: pwiz::identdata::Peptide
- Modification()
: pwiz::identdata::Modification
, pwiz::proteome::Modification
, pwiz::tradata::Modification
- modificationInfo
: pwiz::data::pepxml::SearchHit
- ModificationInfo()
: pwiz::data::pepxml::ModificationInfo
- ModificationList()
: pwiz::proteome::ModificationList
- ModificationMap()
: pwiz::proteome::ModificationMap
, pwiz::proteome::Peptide
, pwiz::proteome::ModificationMap
- modificationParams
: pwiz::identdata::SpectrumIdentificationProtocol
- modifications
: pwiz::tradata::Peptide
, pwiz::proteome::Peptide
- modificationStateEntries
: pwiz::eharmony::PeptideEntry
- ModificationStateEntry()
: pwiz::eharmony::ModificationStateEntry
- modifiedMass
: pwiz::eharmony::ModificationStateEntry
- modifiedPeptide
: pwiz::data::pepxml::ModificationInfo
- modifiedSequence
: pwiz::eharmony::ModificationStateEntry
- modify()
: pwiz::util::mru_list< Item, KeyExtractor >
- mods
: TestModifiedPeptide
- modsHaveFormulas
: TestModifiedPeptide
- molecularWeight()
: pwiz::proteome::Peptide
, pwiz::chemistry::Formula
- monoisotope
: pwiz::chemistry::Element::Info::Record
- monoisotopicDeltaMass()
: pwiz::proteome::Modification
, pwiz::proteome::ModificationList
, pwiz::proteome::ModificationMap
- monoisotopicFrequency
: pwiz::frequency::PeakDetectorMatchedFilter::Score
- monoisotopicIntensity
: pwiz::frequency::PeakDetectorMatchedFilter::Score
- monoisotopicMass()
: pwiz::proteome::Peptide
, pwiz::chemistry::Formula
- monoisotopicMassDelta
: pwiz::identdata::Modification
, pwiz::identdata::SubstitutionModification
, pwiz::tradata::Modification
- monoisotopicPeakThresholdFactor
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- monoMass
: TestFormula
, TestAminoAcid
, TestModifiedPeptide
- monoMassNeutral
: TestPeptide
- monoMassPlus1
: TestPeptide
- monoMassPlus2
: TestPeptide
- motif
: TestModification
- mp
: TestModifiedPeptide
- mr_zorg
: Fifth
- mru()
: pwiz::util::mru_list< Item, KeyExtractor >
- mru_list()
: pwiz::util::mru_list< Item, KeyExtractor >
- ms1_5
: pwiz::eharmony::FeatureSequenced
- ms2
: pwiz::eharmony::FeatureSequenced
, pwiz::analysis::Pseudo2DGel::Config
- MS2Deisotoper()
: pwiz::analysis::MS2Deisotoper
- MS2NoiseFilter()
: pwiz::analysis::MS2NoiseFilter
- msd
: pwiz::analysis::MSDataAnalyzer::DataInfo
- msd_
: pwiz::msdata::mz5::ReferenceWrite_mz5
, pwiz::msdata::mz5::ReferenceRead_mz5
, pwiz::analysis::SpectrumList_TitleMaker
- MSData
: pwiz::analysis::FeatureDetector
, pwiz::msdata::MSData
, pwiz::analysis::FeatureDetectorPeakel
, pwiz::msdata::MSData
- MSDataAnalyzerDriver()
: pwiz::analysis::MSDataAnalyzerDriver
- MSDataCache()
: pwiz::analysis::MSDataCache
- MSDataFile()
: pwiz::msdata::MSDataFile
- MSDataMerger()
: pwiz::msdata::MSDataMerger
- msDetector
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- MSIAMTData()
: pwiz::eharmony::MSIAMTData
- MSIHandler()
: pwiz::utility::MSIHandler
- msIonization
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- msLevel
: pwiz::msdata::SpectrumInfo
, pwiz::identdata::MassTable
, ScanHeaderStruct
- msLevels
: pwiz::analysis::RunSummary::Config
- msLevelSet_
: pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet
- msLevelsToFilter_
: pwiz::analysis::SpectrumList_ZeroSamplesFilter
- msLevelsToPeakPick_
: pwiz::analysis::SpectrumList_PeakPicker
- msLevelsToSmooth_
: pwiz::analysis::ChromatogramList_SavitzkyGolaySmoother
, pwiz::analysis::SpectrumList_Smoother
- msLevelsToThreshold
: pwiz::analysis::ThresholdFilter
- msManufacturer
: pwiz::data::pepxml::MSMSRunSummary
, pwiz::data::pepxml::MSMSPipelineAnalysis
- msMassAnalyzer
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- msModel
: pwiz::data::pepxml::MSMSRunSummary
, pwiz::data::pepxml::MSMSPipelineAnalysis
- MSMSPipelineAnalysis()
: pwiz::data::pepxml::MSMSPipelineAnalysis
- MSMSRunSummary()
: pwiz::data::pepxml::MSMSRunSummary
- msmsRunSummary
: pwiz::data::pepxml::MSMSPipelineAnalysis
- MSnHeader()
: pwiz::msdata::MSnHeader
- mu
: pwiz::eharmony::IslandizedDatabase::Gaussian
- MyWrapper()
: MyWrapper
- mz
: Goober
, pwiz::msdata::MZIntensityPair
, pwiz::msdata::SpectrumInfo::PrecursorInfo
, pwiz::data::peakdata::Peakel
, pwiz::data::peakdata::Feature
, TestDatum
, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo
, pwiz::analysis::PrecursorRecalculator::PrecursorInfo
, pwiz::analysis::PepxmlRecordReader::record
, RawMassDatum
, Simple
, pwiz::peptideid::PeptideID::Record
, pwiz::peptideid::PeptideID::Location
, pwiz::data::peakdata::Peak
, pwiz::data::CalibrationParameters
- MZ
: pwiz::chemistry::MZTolerance
- Mz
: pwiz::identdata::Serializer_Text
- mz
: pwiz::utility::MSIHandler::Record
- MZ5_FILE_MAJOR_VERSION
: pwiz::msdata::mz5::Configuration_mz5
- MZ5_FILE_MINOR_VERSION
: pwiz::msdata::mz5::Configuration_mz5
- MZ5DataSets
: pwiz::msdata::mz5::Configuration_mz5
- mzCenter
: pwiz::analysis::RegionSIC::Config
- mzFromFilterString()
: pwiz::msdata::SpectrumInfo
- mzHigh
: pwiz::analysis::Pseudo2DGel::Config
, pwiz::msdata::SpectrumInfo
- mzHigh_
: pwiz::analysis::SpectrumList_MZWindow
- mzInitialEstimate
: TestInfo
- MZIntensityPair()
: pwiz::msdata::MZIntensityPair
, pwiz::analysis::PrecursorRecalculator
, pwiz::analysis::PeakFamilyDetector
, pwiz::msdata::MZIntensityPair
- mzLeftWidth
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- mzLow
: pwiz::msdata::SpectrumInfo
, pwiz::analysis::Pseudo2DGel::Config
- mzLow_
: pwiz::analysis::SpectrumList_MZWindow
- mzMonoisotopic
: pwiz::data::peakdata::PeakFamily
- mzRange
: pwiz::analysis::RegionTIC::Config
, pwiz::analysis::RegionAnalyzer::Config
- mzRightWidth
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- mzrtEqual()
: mzrtEqual
- MZTolerance()
: pwiz::chemistry::MZTolerance
- mzTolerance
: pwiz::analysis::PeakelPicker_Basic::Config
, pwiz::analysis::PeakelGrower_Proximity::Config
- mzTrue
: TestInfo
- mzType
: pwiz::identdata::DelimReader
- mzVariance
: pwiz::data::peakdata::Peakel