SpectrumList implementation to replace peak profiles with picked peaks. More...

#include <SpectrumList_PeakPicker.hpp>

Inheritance diagram for pwiz::analysis::SpectrumList_PeakPicker:

Public Member Functions
	SpectrumList_PeakPicker (const msdata::SpectrumListPtr &inner, PeakDetectorPtr algorithm, bool preferVendorPeakPicking, const util::IntegerSet &msLevelsToPeakPick)
virtual msdata::SpectrumPtr	spectrum (size_t index, bool getBinaryData=false) const
	retrieve a spectrum by index
Public Member Functions inherited from pwiz::msdata::SpectrumListWrapper
	SpectrumListWrapper (const SpectrumListPtr &inner)
virtual size_t	size () const
	returns the number of spectra
virtual bool	empty () const
	returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL)
virtual const SpectrumIdentity &	spectrumIdentity (size_t index) const
	access to a spectrum index
virtual SpectrumPtr	spectrum (size_t index, DetailLevel detailLevel) const
	retrieve a spectrum by index
virtual const boost::shared_ptr< const DataProcessing >	dataProcessingPtr () const
	returns the data processing affecting spectra retrieved through this interface
Public Member Functions inherited from pwiz::msdata::SpectrumList
virtual size_t	find (const std::string &id) const
	find id in the spectrum index (returns size() on failure)
virtual IndexList	findNameValue (const std::string &name, const std::string &value) const
	find all spectrum indexes with specified name/value pair
virtual IndexList	findSpotID (const std::string &spotID) const
	find all spectrum indexes with spotID (returns empty vector on failure)
virtual SpectrumPtr	spectrum (const SpectrumPtr &seed, bool getBinaryData) const
	get a copy of the seed spectrum, optionally with its binary data populated this is useful for formats like mzML that can delay loading of binary data
virtual	~SpectrumList ()

Static Public Member Functions
static bool	accept (const msdata::SpectrumListPtr &inner)

Private Attributes
PeakDetectorPtr	algorithm_
const util::IntegerSet	msLevelsToPeakPick_
int	mode_

Additional Inherited Members
Protected Attributes inherited from pwiz::msdata::SpectrumListWrapper
SpectrumListPtr	inner_
DataProcessingPtr	dp_

Detailed Description

SpectrumList implementation to replace peak profiles with picked peaks.

Definition at line 38 of file SpectrumList_PeakPicker.hpp.

Constructor & Destructor Documentation

pwiz::analysis::SpectrumList_PeakPicker::SpectrumList_PeakPicker	(	const msdata::SpectrumListPtr &	inner,
		PeakDetectorPtr	algorithm,
		bool	preferVendorPeakPicking,
		const util::IntegerSet &	msLevelsToPeakPick
	)