pwiz::proteome::PeptideDatabase Class Reference

#include <PeptideDatabase.hpp>

List of all members.

Public Types
typedef const PeptideDatabaseRecord *	iterator

Public Member Functions
virtual	~PeptideDatabase ()
virtual int	size () const =0
virtual const PeptideDatabaseRecord *	records () const =0
virtual std::string	sequence (const PeptideDatabaseRecord &record) const =0
virtual void	append (const PeptideDatabaseRecord &record, const std::string &sequence="")=0
virtual void	write (const std::string &filename) const =0
iterator	begin () const
iterator	end () const
iterator	mass_lower_bound (double mass) const
iterator	mass_upper_bound (double mass) const

Static Public Member Functions
static std::auto_ptr < PeptideDatabase >	create ()
static std::auto_ptr< const PeptideDatabase >	create (const std::string &filename)

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Detailed Description

Definition at line 76 of file PeptideDatabase.hpp.

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Member Typedef Documentation

typedef const PeptideDatabaseRecord* pwiz::proteome::PeptideDatabase::iterator

Definition at line 95 of file PeptideDatabase.hpp.

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Constructor & Destructor Documentation

virtual pwiz::proteome::PeptideDatabase::~PeptideDatabase ( )

inlinevirtual

Definition at line 82 of file PeptideDatabase.hpp.

{}

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Member Function Documentation

static std::auto_ptr<PeptideDatabase> pwiz::proteome::PeptideDatabase::create ( )

static

static std::auto_ptr<const PeptideDatabase> pwiz::proteome::PeptideDatabase::create ( const std::string &  filename )

static

virtual int pwiz::proteome::PeptideDatabase::size ( ) const

pure virtual

Referenced by test_basic().

virtual const PeptideDatabaseRecord* pwiz::proteome::PeptideDatabase::records ( ) const

pure virtual

Referenced by test_basic().

virtual std::string pwiz::proteome::PeptideDatabase::sequence ( const PeptideDatabaseRecord &  record ) const

pure virtual

Referenced by compareRecords(), and test_basic().

virtual void pwiz::proteome::PeptideDatabase::append ( const PeptideDatabaseRecord &  record, const std::string &  sequence = ""  )

pure virtual

Referenced by test_basic(), test_pdb(), test_pdb_vs_integer(), and test_range().

virtual void pwiz::proteome::PeptideDatabase::write ( const std::string &  filename ) const

pure virtual

Referenced by test_basic(), test_pdb(), and test_pdb_vs_integer().

iterator pwiz::proteome::PeptideDatabase::begin ( ) const

inline

Definition at line 96 of file PeptideDatabase.hpp.

Referenced by test_basic(), and test_range().

{return records();}

iterator pwiz::proteome::PeptideDatabase::end ( ) const

inline

Definition at line 97 of file PeptideDatabase.hpp.

Referenced by test_basic().

{return records() + size();}

iterator pwiz::proteome::PeptideDatabase::mass_lower_bound

(

double

mass

)

const

Referenced by test_range().

iterator pwiz::proteome::PeptideDatabase::mass_upper_bound

(

double

mass

)

const

Referenced by test_range().

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The documentation for this class was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/analysis/calibration/PeptideDatabase.hpp