Peptide for which one or more transitions are intended to identify. More...

#include <TraData.hpp>

Inheritance diagram for pwiz::tradata::Peptide:

Public Member Functions
	Peptide (const std::string &id="")
bool	empty () const
	returns true iff all members are empty and contain no params
Public Member Functions inherited from pwiz::data::ParamContainer
CVParam	cvParam (CVID cvid) const
	finds cvid in the container:
CVParam	cvParamChild (CVID cvid) const
	finds child of cvid in the container:
std::vector< CVParam >	cvParamChildren (CVID cvid) const
	finds all children of cvid in the container:
bool	hasCVParam (CVID cvid) const
	returns true iff cvParams contains exact cvid (recursive)
bool	hasCVParamChild (CVID cvid) const
	returns true iff cvParams contains a child (is_a) of cvid (recursive)
UserParam	userParam (const std::string &) const
	finds UserParam with specified name
void	set (CVID cvid, const std::string &value="", CVID units=CVID_Unknown)
	set/add a CVParam (not recursive)
void	set (CVID cvid, double value, CVID units=CVID_Unknown)
	set/add a CVParam (not recursive)
void	set (CVID cvid, int value, CVID units=CVID_Unknown)
	set/add a CVParam (not recursive)
template<typename value_type >
void	set (CVID cvid, value_type value, CVID units=CVID_Unknown)
	set/add a CVParam (not recursive)
void	clear ()
	clears the collections
bool	operator== (const ParamContainer &that) const
	returns true iff this and that have the exact same cvParams and userParams
bool	operator!= (const ParamContainer &that) const
	returns !(this==that)
template<>
void	set (CVID cvid, bool value, CVID units)
	special case for bool (outside the class for gcc 3.4, and inline for msvc)

Public Attributes
std::string	id
	Identifier for the peptide to be used for referencing within a document.
std::string	sequence
	Amino acid sequence of the peptide being described.
std::vector< Modification >	modifications
	List of modifications on this peptide.
std::vector< ProteinPtr >	proteinPtrs
	Reference to zero or more proteins which this peptide is intended to identify.
std::vector< RetentionTime >	retentionTimes
	List of retention time information entries.
Evidence	evidence
Public Attributes inherited from pwiz::data::ParamContainer
std::vector< ParamGroupPtr >	paramGroupPtrs
	a collection of references to ParamGroups
std::vector< CVParam >	cvParams
	a collection of controlled vocabulary terms
std::vector< UserParam >	userParams
	a collection of uncontrolled user terms

Detailed Description

Peptide for which one or more transitions are intended to identify.

Definition at line 211 of file TraData.hpp.

Constructor & Destructor Documentation

pwiz::tradata::Peptide::Peptide ( const std::string & id = "" )

bool pwiz::tradata::Peptide::empty ( ) const

returns true iff all members are empty and contain no params

std::string pwiz::tradata::Peptide::id

Identifier for the peptide to be used for referencing within a document.

Definition at line 214 of file TraData.hpp.

std::string pwiz::tradata::Peptide::sequence

Amino acid sequence of the peptide being described.

Definition at line 217 of file TraData.hpp.

std::vector<Modification> pwiz::tradata::Peptide::modifications

List of modifications on this peptide.

Definition at line 220 of file TraData.hpp.

std::vector<ProteinPtr> pwiz::tradata::Peptide::proteinPtrs

Reference to zero or more proteins which this peptide is intended to identify.

Definition at line 223 of file TraData.hpp.

std::vector<RetentionTime> pwiz::tradata::Peptide::retentionTimes

List of retention time information entries.

Definition at line 226 of file TraData.hpp.

Evidence pwiz::tradata::Peptide::evidence

Definition at line 228 of file TraData.hpp.

The documentation for this struct was generated from the following file: