Implementation of SearchModificationType from the mzIdentML schema. More...
#include <IdentData.hpp>
Public Member Functions | |
| SearchModification () | |
| bool | empty () const |
| returns true iff the element contains no params or param groups | |
 Public Member Functions inherited from pwiz::data::ParamContainer | |
| CVParam | cvParam (CVID cvid) const |
| finds cvid in the container: | |
| CVParam | cvParamChild (CVID cvid) const |
| finds child of cvid in the container: | |
| std::vector< CVParam > | cvParamChildren (CVID cvid) const |
| finds all children of cvid in the container: | |
| bool | hasCVParam (CVID cvid) const |
| returns true iff cvParams contains exact cvid (recursive) | |
| bool | hasCVParamChild (CVID cvid) const |
| returns true iff cvParams contains a child (is_a) of cvid (recursive) | |
| UserParam | userParam (const std::string &) const |
| finds UserParam with specified name | |
| void | set (CVID cvid, const std::string &value="", CVID units=CVID_Unknown) |
| set/add a CVParam (not recursive) | |
| void | set (CVID cvid, double value, CVID units=CVID_Unknown) |
| set/add a CVParam (not recursive) | |
| void | set (CVID cvid, int value, CVID units=CVID_Unknown) |
| set/add a CVParam (not recursive) | |
| template<typename value_type > | |
| void | set (CVID cvid, value_type value, CVID units=CVID_Unknown) |
| set/add a CVParam (not recursive) | |
| void | clear () |
| clears the collections | |
| bool | operator== (const ParamContainer &that) const |
| returns true iff this and that have the exact same cvParams and userParams | |
| bool | operator!= (const ParamContainer &that) const |
| returns !(this==that) | |
| template<> | |
| void | set (CVID cvid, bool value, CVID units) |
| special case for bool (outside the class for gcc 3.4, and inline for msvc) | |
Public Attributes | |
| bool | fixedMod |
| double | massDelta |
| std::vector< char > | residues |
| CVParam | specificityRules |
| Public Attributes inherited from pwiz::data::ParamContainer | |
| std::vector< ParamGroupPtr > | paramGroupPtrs |
| a collection of references to ParamGroups | |
| std::vector< CVParam > | cvParams |
| a collection of controlled vocabulary terms | |
| std::vector< UserParam > | userParams |
| a collection of uncontrolled user terms | |
Detailed Description
Implementation of SearchModificationType from the mzIdentML schema.
Filters applied to the search database. The filter must include at least one of Include and Exclude. If both are used, it is assumed that inclusion is performed first.
Definition at line 388 of file IdentData.hpp.
Constructor & Destructor Documentation
| pwiz::identdata::SearchModification::SearchModification | ( | ) |
Member Function Documentation
| bool pwiz::identdata::SearchModification::empty | ( | ) | const |
returns true iff the element contains no params or param groups
Reimplemented from pwiz::data::ParamContainer.
Member Data Documentation
| bool pwiz::identdata::SearchModification::fixedMod |
Definition at line 392 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSearchModification().
| double pwiz::identdata::SearchModification::massDelta |
Definition at line 393 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSearchModification().
| std::vector<char> pwiz::identdata::SearchModification::residues |
Definition at line 394 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSearchModification().
| CVParam pwiz::identdata::SearchModification::specificityRules |
Definition at line 395 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSearchModification().
The documentation for this struct was generated from the following file:
- /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/identdata/IdentData.hpp
