Implementation of EnzymeType from the mzIdentML schema. More...
#include <IdentData.hpp>
Public Member Functions | |
| Enzyme (const std::string &id="", const std::string &name="") | |
| bool | empty () const |
 Public Member Functions inherited from pwiz::identdata::Identifiable | |
| Identifiable (const std::string &id_="", const std::string &name_="") | |
| virtual | ~Identifiable () |
Public Attributes | |
| std::string | nTermGain |
| std::string | cTermGain |
| proteome::Digestion::Specificity | terminalSpecificity |
| int | missedCleavages |
| int | minDistance |
| std::string | siteRegexp |
| ParamContainer | enzymeName |
| Public Attributes inherited from pwiz::identdata::Identifiable | |
| std::string | id |
| std::string | name |
Detailed Description
Implementation of EnzymeType from the mzIdentML schema.
The details of an individual cleavage enzyme should be provided by giving a regular expression or a CV term if a "standard" enzyme cleavage has been performed.
Definition at line 408 of file IdentData.hpp.
Constructor & Destructor Documentation
| pwiz::identdata::Enzyme::Enzyme | ( | const std::string & | id = "", |
| const std::string & | name = "" |
||
| ) |
Member Function Documentation
|
virtual |
Reimplemented from pwiz::identdata::Identifiable.
Member Data Documentation
| std::string pwiz::identdata::Enzyme::nTermGain |
Definition at line 413 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().
| std::string pwiz::identdata::Enzyme::cTermGain |
Definition at line 414 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().
| proteome::Digestion::Specificity pwiz::identdata::Enzyme::terminalSpecificity |
Definition at line 415 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().
| int pwiz::identdata::Enzyme::missedCleavages |
Definition at line 416 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().
| int pwiz::identdata::Enzyme::minDistance |
Definition at line 417 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().
| std::string pwiz::identdata::Enzyme::siteRegexp |
Definition at line 419 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), testCleavageAgent(), testEnzyme(), and testPepXMLSpecificity().
| ParamContainer pwiz::identdata::Enzyme::enzymeName |
Definition at line 420 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), testCleavageAgent(), testEnzyme(), and testPepXMLSpecificity().
The documentation for this struct was generated from the following file:
- /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/identdata/IdentData.hpp
