Implementation of SpectrumIdentificationProtocolType from the mzIdentML schema. More...
#include <IdentData.hpp>
Public Member Functions | |
| SpectrumIdentificationProtocol (const std::string &id_="", const std::string &name_="") | |
| bool | empty () const |
 Public Member Functions inherited from pwiz::identdata::Identifiable | |
| Identifiable (const std::string &id_="", const std::string &name_="") | |
| virtual | ~Identifiable () |
Public Attributes | |
| AnalysisSoftwarePtr | analysisSoftwarePtr |
| CVParam | searchType |
| ParamContainer | additionalSearchParams |
| std::vector < SearchModificationPtr > | modificationParams |
| Enzymes | enzymes |
| std::vector< MassTablePtr > | massTable |
| ParamContainer | fragmentTolerance |
| ParamContainer | parentTolerance |
| ParamContainer | threshold |
| std::vector< FilterPtr > | databaseFilters |
| DatabaseTranslationPtr | databaseTranslation |
| Public Attributes inherited from pwiz::identdata::Identifiable | |
| std::string | id |
| std::string | name |
Detailed Description
Implementation of SpectrumIdentificationProtocolType from the mzIdentML schema.
The parameters and settings of a SpectrumIdentification analysis.
Definition at line 545 of file IdentData.hpp.
Constructor & Destructor Documentation
| pwiz::identdata::SpectrumIdentificationProtocol::SpectrumIdentificationProtocol | ( | const std::string & | id_ = "", |
| const std::string & | name_ = "" |
||
| ) |
Member Function Documentation
|
virtual |
Reimplemented from pwiz::identdata::Identifiable.
Member Data Documentation
| AnalysisSoftwarePtr pwiz::identdata::SpectrumIdentificationProtocol::analysisSoftwarePtr |
Definition at line 550 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSpectrumIdentificationProtocol().
| CVParam pwiz::identdata::SpectrumIdentificationProtocol::searchType |
Definition at line 552 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSpectrumIdentificationProtocol().
| ParamContainer pwiz::identdata::SpectrumIdentificationProtocol::additionalSearchParams |
Definition at line 553 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSpectrumIdentificationProtocol().
| std::vector<SearchModificationPtr> pwiz::identdata::SpectrumIdentificationProtocol::modificationParams |
Definition at line 554 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSpectrumIdentificationProtocol().
| Enzymes pwiz::identdata::SpectrumIdentificationProtocol::enzymes |
Definition at line 555 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), stripUnmappedMetadata(), and testSpectrumIdentificationProtocol().
| std::vector<MassTablePtr> pwiz::identdata::SpectrumIdentificationProtocol::massTable |
Definition at line 556 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), stripUnmappedMetadata(), and testSpectrumIdentificationProtocol().
| ParamContainer pwiz::identdata::SpectrumIdentificationProtocol::fragmentTolerance |
Definition at line 557 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSpectrumIdentificationProtocol().
| ParamContainer pwiz::identdata::SpectrumIdentificationProtocol::parentTolerance |
Definition at line 558 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testSpectrumIdentificationProtocol().
| ParamContainer pwiz::identdata::SpectrumIdentificationProtocol::threshold |
Definition at line 559 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), stripUnmappedMetadata(), and testSpectrumIdentificationProtocol().
| std::vector<FilterPtr> pwiz::identdata::SpectrumIdentificationProtocol::databaseFilters |
Definition at line 560 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), stripUnmappedMetadata(), and testSpectrumIdentificationProtocol().
| DatabaseTranslationPtr pwiz::identdata::SpectrumIdentificationProtocol::databaseTranslation |
Definition at line 561 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and stripUnmappedMetadata().
The documentation for this struct was generated from the following file:
- /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/identdata/IdentData.hpp
