pwiz::proteome::Serializer_FASTA Class Reference

ProteomeData <-> FASTA stream serialization. More...

#include <Serializer_FASTA.hpp>

List of all members.

Classes
struct	Config
	Serializer_FASTA configuration. More...

Public Member Functions
	Serializer_FASTA (const Config &config=Config())
void	write (std::ostream &os, const ProteomeData &pd, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry) const
	write ProteomeData object to ostream as FASTA
void	read (boost::shared_ptr< std::istream > is, ProteomeData &pd) const
	read in ProteomeData object from a FASTA istream

Private Member Functions
	Serializer_FASTA (Serializer_FASTA &)
Serializer_FASTA &	operator= (Serializer_FASTA &)

Private Attributes
Config	config_

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Detailed Description

ProteomeData <-> FASTA stream serialization.

Definition at line 38 of file Serializer_FASTA.hpp.

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Constructor & Destructor Documentation

pwiz::proteome::Serializer_FASTA::Serializer_FASTA

(

const Config &

config = Config()

)

pwiz::proteome::Serializer_FASTA::Serializer_FASTA ( Serializer_FASTA &  )

private

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Member Function Documentation

void pwiz::proteome::Serializer_FASTA::write	(	std::ostream &	os,
		const ProteomeData &	pd,
		const pwiz::util::IterationListenerRegistry *	iterationListenerRegistry
	)		const

write ProteomeData object to ostream as FASTA

Referenced by testDuplicateId(), testModeMetaDataAndSequence(), testModeMetaDataOnly(), testModeOff(), and testWriteRead().

void pwiz::proteome::Serializer_FASTA::read	(	boost::shared_ptr< std::istream >	is,
		ProteomeData &	pd
	)		const

read in ProteomeData object from a FASTA istream

Referenced by testDuplicateId(), testModeMetaDataAndSequence(), testModeMetaDataOnly(), testModeOff(), and testWriteRead().

Serializer_FASTA& pwiz::proteome::Serializer_FASTA::operator= ( Serializer_FASTA &  )

private

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Member Data Documentation

Config pwiz::proteome::Serializer_FASTA::config_

private

Definition at line 60 of file Serializer_FASTA.hpp.

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The documentation for this class was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/proteome/Serializer_FASTA.hpp