This class allows access to identified proteins in PeptideProphet files. More...

#include <PeptideID_pepXML.hpp>

Inheritance diagram for pwiz::peptideid::PeptideID_pepXml:

Public Member Functions
	PeptideID_pepXml (const std::string &filename)
	Constructor taking path to input file in std::string.
	PeptideID_pepXml (const char *filename)
	Constructor taking path to input file from const char*.
	PeptideID_pepXml (std::istream *in)
	Constructor taking std::istream as input.
virtual	~PeptideID_pepXml ()
	Destructor.
virtual Record	record (const Location &location) const
	Returns the Record object associated with the given nativeID.
virtual std::multimap< double, boost::shared_ptr < PeptideID::Record > >::const_iterator	record (double retention_time_sec) const
virtual Iterator	begin () const
virtual Iterator	end () const
Public Member Functions inherited from pwiz::peptideid::PeptideID
virtual	~PeptideID ()

Private Attributes
boost::shared_ptr< Impl >	pimpl

Detailed Description

This class allows access to identified proteins in PeptideProphet files.

A PeptideID_pepXML object is contructed with either the path to a PeptideProphet format file (*.pep.xml), or an std::istream open to the beginning of a pep.xml file.

Definition at line 41 of file PeptideID_pepXML.hpp.

Constructor & Destructor Documentation

pwiz::peptideid::PeptideID_pepXml::PeptideID_pepXml ( const std::string & filename )

Constructor taking path to input file in std::string.

pwiz::peptideid::PeptideID_pepXml::PeptideID_pepXml ( const char * filename )

Constructor taking path to input file from const char*.

pwiz::peptideid::PeptideID_pepXml::PeptideID_pepXml ( std::istream * in )

Constructor taking std::istream as input.

virtual pwiz::peptideid::PeptideID_pepXml::~PeptideID_pepXml ( )

inlinevirtual

Destructor.

Definition at line 54 of file PeptideID_pepXML.hpp.

{}

Member Function Documentation

virtual Record pwiz::peptideid::PeptideID_pepXml::record ( const Location & location ) const

virtual

Returns the Record object associated with the given nativeID.

A range_error is thrown if the nativeID isn't associated with a Record.

Implements pwiz::peptideid::PeptideID.

Referenced by testFilename(), and testIStream().

virtual std::multimap<double, boost::shared_ptr<PeptideID::Record> >::const_iterator pwiz::peptideid::PeptideID_pepXml::record ( double retention_time_sec ) const

virtual

virtual Iterator pwiz::peptideid::PeptideID_pepXml::begin ( ) const

virtual

Implements pwiz::peptideid::PeptideID.

virtual Iterator pwiz::peptideid::PeptideID_pepXml::end ( ) const

virtual

Implements pwiz::peptideid::PeptideID.