Here is a list of all file members with links to the files they belong to:

- t -

• Ta : Chemistry.hpp
• TABULARCONFIG_DELIMITER_OPTIONS_STR : TabularConfig.hpp
• TABULARCONFIG_DELIMITER_USAGE_STR : TabularConfig.hpp
• targetXML : XMLWriterTest.cpp
• Tau : TruncatedLorentzian.hpp
• Tb : Chemistry.hpp
• Tc : Chemistry.hpp
• TCHAR : SHA1.h
• Te : Chemistry.hpp
• test() : SavitzkyGolaySmootherTest.cpp , PeakDetectorNaiveTest.cpp , diff_std_test.cpp , ExceptionTest.cpp , IntegerSetTest.cpp , MemoryIndexTest.cpp , IterationListenerTest.cpp , mru_list_test.cpp , MSDataAnalyzerTest.cpp , obotest.cpp , SHA1_ostream_test.cpp , SHA1CalculatorTest.cpp , ParamTypesTest.cpp , IPIFASTADatabaseTest.cpp , WhittakerSmootherTest.cpp , RegionAnalyzerTest.cpp , UnimodTest.cpp , DiffTest.cpp , FeatureDetectorPeakelTest.cpp , IOTest.cpp , KwCVMapTest.cpp , ZeroSampleFillerTest.cpp , FeatureDetectorTuningTest.cpp , Pep2MzIdentTest.cpp , ReaderTest.cpp , FeatureModelerTest.cpp , ReferencesTest.cpp , Serializer_mzid_Test.cpp , AMTDatabaseTest.cpp , MZRTFieldTest.cpp , Serializer_Text_Test.cpp , CalibrationParametersTest.cpp , NoiseTest.cpp , FrequencyDataTest.cpp , PeakDataTest.cpp , LeastSquaresCalibratorTest.cpp , BinTest.cpp , PeakelGrowerTest.cpp , SampleDatumTest.cpp , BinaryDataEncoderTest.cpp , PeakelPickerTest.cpp , ChromatogramList_mz5_Test.cpp , ChromatogramList_mzML_Test.cpp , DatabaseQueryTest.cpp , PeakExtractorTest.cpp , ChromatogramList_mzML_Test.cpp , ChromatogramListBaseTest.cpp , PeakFamilyDetectorFTTest.cpp , DiffTest.cpp , IOTest.cpp , MassSpreadTest.cpp , DistanceAttributesTest.cpp , PeakFinderTest.cpp , LegacyAdapterTest.cpp , MSDataFileTest.cpp , PeakFitterTest.cpp , MSDataMergerTest.cpp , MSnReaderTest.cpp , Feature2PeptideMatcherTest.cpp , PeptideIDMapTest.cpp , RAMPAdapterTest.cpp , ReaderTest.cpp , ProteinList_DecoyGeneratorTest.cpp , ReferencesTest.cpp , SpectrumInfoTest.cpp , ChromatogramListWrapperTest.cpp , Feature_dataFetcherTest.cpp , ProteinList_FilterTest.cpp , SpectrumList_MGF_Test.cpp , SpectrumList_MSn_Test.cpp , ProteinListFactoryTest.cpp , SpectrumList_mz5_Test.cpp , SpectrumList_mzML_Test.cpp , MatcherTest.cpp , PrecursorRecalculatorDefaultTest.cpp , SpectrumList_mzML_Test.cpp , SpectrumList_mzXML_Test.cpp , SpectrumList_ChargeStateCalculatorTest.cpp , SpectrumList_mzXML_Test.cpp , SpectrumListBaseTest.cpp , SavitzkyGolaySmootherTest.cpp , NeighborJoinerTest.cpp , SpectrumList_FilterTest.cpp , SpectrumListCacheTest.cpp , SpectrumListWrapperTest.cpp , SpectrumList_MetadataFixerTest.cpp , AminoAcidTest.cpp , DiffTest.cpp , PeptideMatcherTest.cpp , SpectrumList_MZWindowTest.cpp , PeptideTest.cpp , ProteinListCacheTest.cpp , SpectrumList_PeakFilterTest.cpp , ProteinListWrapperTest.cpp , ProteomeDataFileTest.cpp , ExtraZeroSamplesFilterTest.cpp , SearchNeighborhoodCalculatorTest.cpp , SpectrumList_PrecursorRecalculatorTest.cpp , ReaderTest.cpp , DiffTest.cpp , SpectrumList_PrecursorRefineTest.cpp , IOTest.cpp , ReaderTest.cpp , FrequencyEstimatorPhysicalModelTest.cpp , SpectrumList_SorterTest.cpp , ReferencesTest.cpp , TraDataFileTest.cpp , SpectrumListFactoryTest.cpp , IsotopeEnvelopeEstimatorTest.cpp , MZToleranceTest.cpp , LocalMaximumPeakDetectorTest.cpp , FrequencyEstimatorSimpleTest.cpp , BinaryIndexStreamTest.cpp , OrderedPairTest.cpp , StatsTest.cpp , cvtest.cpp , SAXParserTest.cpp , XMLWriterTest.cpp , PeakDetectorMatchedFilterTest.cpp , CVTranslatorTest.cpp , almost_equal_test.cpp , Base64Test.cpp , CVTranslatorTest.cpp , ClickwrapPrompterTest.cpp , endian_test.cpp
• test1() : IsotopeTableTest.cpp
• test2() : PrecursorRecalculatorDefaultTest.cpp , IsotopeTableTest.cpp
• test256() : Base64Test.cpp
• test3() : IsotopeTableTest.cpp
• test4() : IsotopeTableTest.cpp
• test5peptide() : PrecursorRecalculatorDefaultTest.cpp
• test5peptideFT() : SpectrumList_PrecursorRecalculatorTest.cpp
• test_2Pass() : NoiseTest.cpp
• test_2Pass_NoSignal() : NoiseTest.cpp
• test_basic() : PeptideDatabaseTest.cpp
• test_compute() : MatchedFilterTest.cpp
• test_createFilter() : MatchedFilterTest.cpp
• test_createFilters() : MatchedFilterTest.cpp
• test_default_double() : almost_equal_test.cpp
• test_default_float() : almost_equal_test.cpp
• TEST_EPILOG : unit.hpp
• TEST_FAILED : unit.hpp
• test_format_date_time() : DateTimeTest.cpp
• test_integer() : MassDatabaseTest.cpp
• test_kernel() : MatchedFilterTest.cpp
• test_multiplier() : almost_equal_test.cpp
• test_mzML_1_0() : RAMPAdapterTest.cpp
• test_parse_date_time() : DateTimeTest.cpp
• test_pdb() : MassDatabaseTest.cpp
• test_pdb_vs_integer() : MassDatabaseTest.cpp
• TEST_PROLOG : unit.hpp
• TEST_PROLOG_EX : unit.hpp
• test_pvalue() : NoiseTest.cpp
• test_range() : PeptideDatabaseTest.cpp
• test_real() : erfTest.cpp
• test_real_wrapper() : erfTest.cpp
• test_SampledData() : MatchedFilterTest.cpp
• test_series() : erfTest.cpp
• test_SNR() : PeakFinderTest.cpp
• test_time_from_OADATE() : DateTimeTest.cpp
• test_v3() : SpectrumList_MSn_Test.cpp
• test_xml_datetime() : DateTimeTest.cpp
• testAbbreviateByteSize() : FilesystemTest.cpp
• testAccept() : ReaderTest.cpp
• testAddition() : FrequencyDataTest.cpp
• testAdjustRT() : DataFetcherContainerTest.cpp
• testAllDataProcessing() : MSDataTest.cpp
• testAlternativeProtein() : MinimumPepXMLTest.cpp
• testAmbiguousResidue() : DiffTest.cpp , IOTest.cpp
• testAminoAcidModification() : MinimumPepXMLTest.cpp
• testAminoAcids : AminoAcidTest.cpp
• testAnalysisCollection() : DiffTest.cpp , IOTest.cpp
• testAnalysisData() : DiffTest.cpp , IOTest.cpp
• testAnalysisProtocolCollection() : DiffTest.cpp , IOTest.cpp
• testAnalysisResult() : MinimumPepXMLTest.cpp
• testAnalysisSampleCollection() : DiffTest.cpp , IOTest.cpp , ReferencesTest.cpp
• testAnalysisSoftware() : DiffTest.cpp , IOTest.cpp
• testAnalyzer() : LegacyAdapterTest.cpp
• testArray : SavitzkyGolaySmootherTest.cpp , OrderedPairTest.cpp
• testArrayX : WhittakerSmootherTest.cpp
• testArrayY : WhittakerSmootherTest.cpp
• testAutomaticUpdate() : MSDataCacheTest.cpp
• testBadFile() : BinaryDataEncoderTest.cpp
• testBadXML() : SAXParserTest.cpp
• testBanded() : LinearSolverTest.cpp
• testBandedComplex() : LinearSolverTest.cpp
• testBasic() : MagnitudeLorentzianTest.cpp , SpectrumIteratorTest.cpp , ParabolaTest.cpp
• testBibliographicReference() : DiffTest.cpp , IOTest.cpp
• testBinaryDataArray() : DiffTest.cpp , IOTest.cpp , ReferencesTest.cpp
• testBinaryDataArrayExternalMetadata() : IOTest.cpp
• testBinaryDataOnly() : DiffTest.cpp
• testBMS1 : SpectrumList_MSn_Test.cpp
• testBMS2 : SpectrumList_MSn_Test.cpp
• testBombesin() : FeatureDetectorPeakelTest.cpp , FeatureDetectorTuningTest.cpp
• testBSADigestion() : DigestionTest.cpp
• testCancel() : IterationListenerTest.cpp
• testChargeStateCalculators : SpectrumList_ChargeStateCalculatorTest.cpp
• testChargeStateCalculatorsSize : SpectrumList_ChargeStateCalculatorTest.cpp
• testChromatogram() : DiffTest.cpp , IOTest.cpp , ReferencesTest.cpp
• testChromatogramList() : DiffTest.cpp , IOTest.cpp
• testChromatogramListWithPositions() : IOTest.cpp
• testChromatograms() : MSDataTest.cpp
• testCleavageAgent() : IdentDataTest.cpp
• testCleavageAgents() : DigestionTest.cpp
• testCMS1_v3 : SpectrumList_MSn_Test.cpp
• testCMS2 : SpectrumList_MSn_Test.cpp
• testCMS2_v3 : SpectrumList_MSn_Test.cpp
• testColinearLinearWarp() : WarpFunctionTest.cpp
• testComplex() : LinearSolverTest.cpp
• testComponent() : DiffTest.cpp , IOTest.cpp
• testComponentList() : DiffTest.cpp , IOTest.cpp , ReferencesTest.cpp
• testCompound() : DiffTest.cpp
• testConceptChecking() : MZRTFieldTest.cpp
• testConfig() : RegionAnalyzerTest.cpp
• testConfiguration() : CalibratorTrialTest.cpp , BinaryDataEncoderTest.cpp , DiffTest.cpp
• testContact() : DiffTest.cpp
• testContactRole() : ReferencesTest.cpp , DiffTest.cpp , IOTest.cpp
• testContacts() : ReferencesTest.cpp
• testContainer() : OrderedPairTest.cpp
• testContains() : IntegerSetTest.cpp
• testConversion() : IdentDataTest.cpp
• testCreation() : PeakDetectorMatchedFilterTest.cpp , PeakDetectorNaiveTest.cpp
• testCV() : diff_std_test.cpp , IOTest.cpp
• testCVMap() : KwCVMapTest.cpp
• testCVMapIO() : KwCVMapTest.cpp
• testCVParam() : diff_std_test.cpp , IOTest.cpp
• testData : LocalMaximumPeakDetectorTest.cpp , SavitzkyGolaySmootherTest.cpp , ZeroSampleFillerTest.cpp , FrequencyEstimatorSimpleTest.cpp , MagnitudeLorentzianTest.cpp
• testData2_LocalMax() : FrequencyEstimatorSimpleTest.cpp
• testData2_Parabola() : FrequencyEstimatorSimpleTest.cpp
• testData_ : PeakDetectorMatchedFilterTestData.hpp , PeakExtractorTest.cpp , PrecursorRecalculatorDefaultTest.cpp
• testDatabaseTranslation() : DiffTest.cpp
• testDataBegin_ : PrecursorRecalculatorDefaultTest.cpp
• testDataCalibrationA_ : PeakDetectorMatchedFilterTestData.hpp
• testDataCalibrationB_ : PeakDetectorMatchedFilterTestData.hpp
• testDataCollection() : DiffTest.cpp , IOTest.cpp
• testDataEnd_ : PrecursorRecalculatorDefaultTest.cpp
• testDataObservationDuration_ : PeakDetectorMatchedFilterTestData.hpp
• testDataProcessing() : DiffTest.cpp , IOTest.cpp , ReferencesTest.cpp
• testDataSize : LocalMaximumPeakDetectorTest.cpp , SavitzkyGolaySmootherTest.cpp , ZeroSampleFillerTest.cpp
• testDataSize_ : PeakDetectorMatchedFilterTestData.hpp , PeakExtractorTest.cpp , PrecursorRecalculatorDefaultTest.cpp
• testDBSequence() : DiffTest.cpp , IOTest.cpp , ReferencesTest.cpp
• testDecoding() : SAXParserTest.cpp
• testDefault() : MSDataCacheTest.cpp
• testDefaultTabHandler() : TabReaderTest.cpp
• TestDeisotopers : SpectrumList_PeakFilterTest.cpp
• testDeisotopersSize : SpectrumList_PeakFilterTest.cpp
• testDeisotoping() : SpectrumList_PeakFilterTest.cpp
• testDerivatives() : ParametrizedFunctionTest.cpp
• testDetector() : LegacyAdapterTest.cpp
• testDifferenceQuotient() : ParametrizedFunctionTest.cpp
• testDigestedPeptides() : IdentDataTest.cpp
• testDigestionMetadata() : DigestionTest.cpp
• testDone() : SAXParserTest.cpp
• testDouble() : LinearLeastSquaresTest.cpp , LinearSolverTest.cpp
• testDoubleQR() : LinearLeastSquaresTest.cpp , LinearSolverTest.cpp
• testDuplicateId() : Serializer_FASTA_Test.cpp
• testEnzymaticSearchConstraint() : MinimumPepXMLTest.cpp
• testEnzyme() : DiffTest.cpp , IOTest.cpp
• testEnzymes() : DiffTest.cpp , IOTest.cpp
• testEquality() : TruncatedLorentzianParametersTest.cpp , OrderedPairTest.cpp
• testErrorFunction() : ParametrizedFunctionTest.cpp
• testErrorLorentzian() : ParametrizedFunctionTest.cpp
• testETDMassFilterData : SpectrumList_PeakFilterTest.cpp
• testETDMassFilterDataSize : SpectrumList_PeakFilterTest.cpp
• testEven() : SpectrumList_FilterTest.cpp
• testEvenMS2() : SpectrumList_FilterTest.cpp
• testEvidence() : DiffTest.cpp
• testExactFit() : ParabolaTest.cpp
• testExactFitQR() : LinearLeastSquaresTest.cpp
• testExpandPathmask() : FilesystemTest.cpp
• testExtraction() : OrderedPairTest.cpp
• testFeature() : PeakDataTest.cpp
• testFeatureAux() : PeakDataTest.cpp
• testFeatureDetectorSimple() : FeatureDetectorSimpleTest.cpp
• testFeatureField() : MZRTFieldTest.cpp
• testFile() : ExtendedReadTest.cpp , SHA1_ostream_test.cpp , SHA1CalculatorTest.cpp
• testFileContent() : DiffTest.cpp
• testFileDescription() : DiffTest.cpp , IOTest.cpp , ReferencesTest.cpp
• testFilename : ChromatogramList_mz5_Test.cpp , SpectrumList_mz5_Test.cpp , PeptideID_pepXMLTest.cpp
• testFileReads() : SpectrumListCacheTest.cpp
• testFilter() : DiffTest.cpp , IOTest.cpp
• testFind() : PeakDetectorMatchedFilterTest.cpp , PeakDetectorNaiveTest.cpp , MZRTFieldTest.cpp , FrequencyDataTest.cpp , DigestionTest.cpp
• testFit() : MagnitudeLorentzianTest.cpp
• testFloating() : diff_std_test.cpp
• testForEach() : SpectrumIteratorTest.cpp
• testFormula() : ChemistryTest.cpp
• testFormulaData : ChemistryTest.cpp
• testFormulaDataSize : ChemistryTest.cpp
• testFormulaOperations() : ChemistryTest.cpp
• testFragmentArray() : DiffTest.cpp , IOTest.cpp
• testFragmentations : PeptideTest.cpp
• testFragmentationsSize : PeptideTest.cpp
• testGaussian_Bombesin2() : FeatureModelerTest.cpp
• testGaussian_Bombesin3() : FeatureModelerTest.cpp
• testGet() : ReaderTest.cpp
• testGetAnchors() : DataFetcherContainerTest.cpp
• testHasBinaryData() : SpectrumList_FilterTest.cpp
• testIdentData() : DiffTest.cpp , IOTest.cpp
• testIdentifiable() : DiffTest.cpp , IOTest.cpp
• testIdentifiableParamContainer() : IOTest.cpp
• testIdentifyFileFormat() : ReaderTest.cpp
• testIDParsing() : MSDataTest.cpp
• testIdSet() : ProteinList_FilterTest.cpp
• testIDTranslation() : cvtest.cpp
• testIndexSet() : ProteinList_FilterTest.cpp , SpectrumList_FilterTest.cpp
• testInfo() : ChemistryTest.cpp
• testInputs() : DiffTest.cpp , IOTest.cpp
• testInstantiation() : IntegerSetTest.cpp
• testInstantiationWithNull() : IsotopeEnvelopeEstimatorTest.cpp
• testInstrument() : DiffTest.cpp
• testInstrumentConfiguration() : DiffTest.cpp , IOTest.cpp , LegacyAdapterTest.cpp , ReferencesTest.cpp
• testIntegerSet() : SpectrumIteratorTest.cpp
• testIntegral() : diff_std_test.cpp
• testIntegralReally() : diff_std_test.cpp
• testIntensityThresholding() : SpectrumList_PeakFilterTest.cpp
• testInterface() : automation_vector_test.cpp
• testIntervalExtraction() : IntegerSetTest.cpp
• testIntervalExtraction2() : IntegerSetTest.cpp
• testIntExtraction() : IntegerSetTest.cpp
• testInvarianceUnderProteinProphet() : MinimumPepXMLTest.cpp
• testIO() : TruncatedLorentzianParametersTest.cpp , MZToleranceTest.cpp
• testIonisation() : LegacyAdapterTest.cpp
• testIonType() : DiffTest.cpp , IOTest.cpp
• testIs() : ParamTypesTest.cpp
• testIsA() : cvtest.cpp
• testIsChildOf() : ParamTypesTest.cpp
• testIStream() : PeptideID_flatTest.cpp , PeptideID_pepXMLTest.cpp
• testIsWithinTolerance() : MZToleranceTest.cpp
• testIteratorEquality() : SpectrumIteratorTest.cpp
• testLeastSquares() : ParabolaTest.cpp
• testLeastSquaresQR() : LinearLeastSquaresTest.cpp
• testMassAbundance() : ChemistryTest.cpp
• testMassAnalyzerFilter() : SpectrumList_FilterTest.cpp
• testMassTable() : DiffTest.cpp , IOTest.cpp
• testMatch() : MinimumPepXMLTest.cpp
• testMatchData() : MinimumPepXMLTest.cpp
• testMatrix() : MatrixTest.cpp
• testMaxPrecisionDiff() : DiffTest.cpp
• testMeasure() : IOTest.cpp , DiffTest.cpp , ReferencesTest.cpp
• testMemoryMRUCache() : SpectrumListCacheTest.cpp
• testMerge() : Feature_dataFetcherTest.cpp , PeptideID_dataFetcherTest.cpp
• testMetadata() : MSDataCacheTest.cpp
• testMetadataFixers : SpectrumList_MetadataFixerTest.cpp
• testMetadataFixersSize : SpectrumList_MetadataFixerTest.cpp
• testMGF : SpectrumList_MGF_Test.cpp
• testMillion() : SHA1CalculatorTest.cpp
• testModAminoAcidMass() : MinimumPepXMLTest.cpp
• testModeBinaryDataOnly() : SpectrumListCacheTest.cpp
• testModelAndManufacturer() : LegacyAdapterTest.cpp
• testModeMetaDataAndBinaryData() : SpectrumListCacheTest.cpp
• testModeMetaDataAndSequence() : ProteinListCacheTest.cpp
• testModeMetaDataOnly() : ProteinListCacheTest.cpp , SpectrumListCacheTest.cpp
• testModeOff() : SpectrumListCacheTest.cpp , ProteinListCacheTest.cpp
• testModification() : DiffTest.cpp , IOTest.cpp , DiffTest.cpp
• testModificationInfo() : MinimumPepXMLTest.cpp
• testModifications : PeptideTest.cpp
• testModificationsSize : PeptideTest.cpp
• testModifiedPeptides : PeptideTest.cpp
• testModifiedPeptidesSize : PeptideTest.cpp
• testMRU() : MSDataCacheTest.cpp
• testMS1 : SpectrumList_MSn_Test.cpp
• testMS2 : SpectrumList_MSn_Test.cpp
• testMS2_v3 : SpectrumList_MSn_Test.cpp
• testMS2Activation() : SpectrumList_FilterTest.cpp
• TestMS2DenoiseArr : SpectrumList_PeakFilterTest.cpp
• testMS2DenoiseSize : SpectrumList_PeakFilterTest.cpp
• testMS2Denoising() : SpectrumList_PeakFilterTest.cpp
• testMSData() : DiffTest.cpp , IOTest.cpp , ReferencesTest.cpp
• testMSDataConstruction() : SpectrumIteratorTest.cpp
• testMSDiffUpdate() : DiffTest.cpp
• testMSIHandler() : TabReaderTest.cpp
• testMSInspectIStream() : PeptideID_flatTest.cpp
• testMSLevelSet() : SpectrumList_FilterTest.cpp
• testMSMSPipelineAnalysis() : MinimumPepXMLTest.cpp
• testMSMSRunSummary() : MinimumPepXMLTest.cpp
• testMulti() : FeatureModelerTest.cpp
• testMultiplePeaks() : PeakFitterTest.cpp
• testMZ() : MZToleranceTest.cpp
• testNamedParamContainer() : IOTest.cpp
• testNested() : SAXParserTest.cpp
• testNoAutoUnescape() : SAXParserTest.cpp
• testNoise_ : NoiseTest.cpp , PeakFinderTest.cpp
• testNoiseFloor() : FrequencyDataTest.cpp
• testNoiseFloorVarianceCalculation() : FrequencyDataTest.cpp
• testNonColinearLinearWarp() : WarpFunctionTest.cpp
• testNontrypticBSA() : DigestionTest.cpp
• testNormalDistribution() : SearchNeighborhoodCalculatorTest.cpp
• testNormalization() : XMLWriterTest.cpp , IsotopeCalculatorTest.cpp
• testObject() : IOTest.cpp
• testObject_ChromatogramList() : IOTest.cpp
• testObject_SpectrumList() : IOTest.cpp
• testObjectWithMSData() : IOTest.cpp
• testOperators : PeptideTest.cpp
• testOperatorsSize : PeptideTest.cpp
• testOrganization() : DiffTest.cpp , IOTest.cpp
• testOtherRelations() : cvtest.cpp
• testPairCount_ : Base64Test.cpp
• testPairs_ : Base64Test.cpp
• testParabola() : PeakFitterTest.cpp
• testParamContainer() : ParamTypesTest.cpp , diff_std_test.cpp , ReferencesTest.cpp , TraDataTest.cpp
• testParameterConversion() : TruncatedLorentzianParametersTest.cpp
• testParamGroup() : IOTest.cpp , diff_std_test.cpp
• testParse() : IntegerSetTest.cpp
• testParse2() : IntegerSetTest.cpp
• testPathContentPairArray : FilesystemTest.cpp
• testPathContentPairArraySize : FilesystemTest.cpp
• testPathmaskArray : FilesystemTest.cpp
• testPathmaskArraySize : FilesystemTest.cpp
• testPeak() : PeakDataTest.cpp
• testPeakData() : PeakDataTest.cpp
• testPeakel() : PeakDataTest.cpp
• testPeakelAux() : PeakDataTest.cpp
• testPeakelConstruction() : PeakDataTest.cpp
• testPeakelField() : MZRTFieldTest.cpp
• testPeakEquality() : PeakDataTest.cpp
• testPeakFamily() : PeakDataTest.cpp
• testPeptide() : DiffTest.cpp , IOTest.cpp , DiffTest.cpp
• testPeptideEvidence() : DiffTest.cpp , IOTest.cpp
• testPeptideHypothesis() : DiffTest.cpp , IOTest.cpp
• testPeptideID_dataFetcherConstructor() : PeptideID_dataFetcherTest.cpp
• testPeptideProphetResult() : MinimumPepXMLTest.cpp
• testPeptides : PeptideTest.cpp
• testPeptidesSize : PeptideTest.cpp
• testPepXMLSpecificity() : Serializer_pepXML_Test.cpp
• testPerson() : IOTest.cpp , DiffTest.cpp
• testPiecewiseLinearWarp() : WarpFunctionTest.cpp
• testPolysiloxane() : ChemistryTest.cpp
• testPPM() : MZToleranceTest.cpp
• testPrecursor() : ReferencesTest.cpp , DiffTest.cpp , IOTest.cpp
• testPrecursorMassRemoval() : SpectrumList_PeakFilterTest.cpp
• testPrecursorRefine() : SpectrumList_PrecursorRefineTest.cpp
• testPredicate() : MZRTFieldTest.cpp
• testPredicate_Feature() : MZRTFieldTest.cpp
• testPrediction() : DiffTest.cpp
• testProbabilites() : IsotopeCalculatorTest.cpp
• testProcessingMethod() : IOTest.cpp , DiffTest.cpp
• testProduct() : IOTest.cpp , DiffTest.cpp , ReferencesTest.cpp
• testProjected() : SHA1CalculatorTest.cpp
• testPropertyValues() : cvtest.cpp
• testProtein() : DiffTest.cpp
• testProteinAmbiguityGroup() : DiffTest.cpp , IOTest.cpp
• testProteinDetection() : IOTest.cpp , DiffTest.cpp
• testProteinDetectionHypothesis() : IOTest.cpp , DiffTest.cpp
• testProteinDetectionList() : IOTest.cpp , DiffTest.cpp
• testProteinDetectionProtocol() : IOTest.cpp , DiffTest.cpp
• testProteinList() : DiffTest.cpp
• testProteinListSimple() : ProteomeDataTest.cpp
• testProteomeData() : DiffTest.cpp
• testProvider() : DiffTest.cpp , IOTest.cpp
• testQ3RatioResult() : MinimumPepXMLTest.cpp
• testQR() : qrTest.cpp
• testRead() : ReaderTest.cpp
• testReader() : ProteomeDataFileTest.cpp , MSDataFileTest.cpp
• testRealDatabase() : IPIFASTADatabaseTest.cpp
• testRectangularQR() : qrTest.cpp
• testReflector() : qrTest.cpp
• testRegexCVMap() : KwCVMapTest.cpp
• testRegexCVMapIO() : KwCVMapTest.cpp
• testRemove() : IterationListenerTest.cpp
• testResidue() : DiffTest.cpp , IOTest.cpp
• testRetentionTime() : DiffTest.cpp
• testReversedList() : ProteinList_DecoyGeneratorTest.cpp
• testRootElement() : SAXParserTest.cpp
• testRun() : IOTest.cpp , DiffTest.cpp , ReferencesTest.cpp
• testSample() : DiffTest.cpp , IOTest.cpp , DiffTest.cpp , IOTest.cpp
• testSampleComponent() : DiffTest.cpp
• testSampleEnzyme() : MinimumPepXMLTest.cpp
• testSamples() : TruncatedLorentzianParametersTest.cpp
• testSaxParserString() : SAXParserTest.cpp
• testScan() : IOTest.cpp , ReferencesTest.cpp , PeakDataTest.cpp , DiffTest.cpp
• testScanEventSet() : SpectrumList_FilterTest.cpp
• testScanList() : IOTest.cpp , DiffTest.cpp , ReferencesTest.cpp
• testScanNumberSet() : SpectrumList_FilterTest.cpp
• testScanSettings() : IOTest.cpp , ReferencesTest.cpp , DiffTest.cpp
• testScanTimeRange() : SpectrumList_FilterTest.cpp
• testSearchDatabase() : IOTest.cpp , MinimumPepXMLTest.cpp , DiffTest.cpp
• testSearchHit() : MinimumPepXMLTest.cpp
• testSearchModification() : IOTest.cpp , DiffTest.cpp
• testSearchResult() : MinimumPepXMLTest.cpp
• testSearchSummary() : MinimumPepXMLTest.cpp
• testSelectedIndices() : SpectrumList_FilterTest.cpp , ProteinList_FilterTest.cpp
• testSemitrypticBSA() : DigestionTest.cpp
• testSemitrypticMethionineClippingBSA() : DigestionTest.cpp
• testSequenceCollection() : IOTest.cpp , DiffTest.cpp
• testSerialize() : Serializer_protXML_Test.cpp , Serializer_pepXML_Test.cpp , Serializer_mzid_Test.cpp
• testSerializeRead() : Serializer_Text_Test.cpp
• testSerializeReally() : Serializer_pepXML_Test.cpp
• testSerializeWrite() : Serializer_Text_Test.cpp
• testSHA1() : MSDataFileTest.cpp
• testShuffledList() : ProteinList_DecoyGeneratorTest.cpp
• testSieve() : SpectrumIteratorTest.cpp
• testSimpleRectangleQR() : LinearLeastSquaresTest.cpp
• testSnapModifications() : IdentDataTest.cpp
• testSoftware() : PeakDataTest.cpp , DiffTest.cpp , IOTest.cpp , LegacyAdapterTest.cpp , DiffTest.cpp , IOTest.cpp
• testSource() : DiffTest.cpp
• testSourceFile() : DiffTest.cpp , IOTest.cpp , DiffTest.cpp , IOTest.cpp
• testSparse() : LinearSolverTest.cpp
• testSpecificity() : MinimumPepXMLTest.cpp
• testSpectraData() : IOTest.cpp , DiffTest.cpp
• testSpectrum() : DiffTest.cpp , IOTest.cpp , MSnReaderTest.cpp , ReferencesTest.cpp
• testSpectrumIdentification() : IOTest.cpp , DiffTest.cpp
• testSpectrumIdentificationItem() : DiffTest.cpp , IOTest.cpp
• testSpectrumIdentificationList() : DiffTest.cpp , IOTest.cpp
• testSpectrumIdentificationProtocol() : DiffTest.cpp , IOTest.cpp
• testSpectrumIdentificationResult() : IOTest.cpp , DiffTest.cpp
• testSpectrumList() : DiffTest.cpp , IOTest.cpp
• testSpectrumListSimple() : MSDataTest.cpp
• testSpectrumListWithPositions() : IOTest.cpp
• testSpectrumListWriteProgress() : IOTest.cpp
• testSpectrumQuery() : MinimumPepXMLTest.cpp
• testSplineWarp() : WarpFunctionTest.cpp
• testStatic() : SHA1CalculatorTest.cpp
• testStream() : SHA1CalculatorTest.cpp
• testString() : diff_std_test.cpp
• testStripChargeFromConventionalSpectrumId() : Serializer_pepXML_Test.cpp
• testSubstitutionModification() : DiffTest.cpp , IOTest.cpp
• testSulfur() : IsotopeTableTest.cpp
• testSynonyms() : cvtest.cpp
• testTarget() : DiffTest.cpp
• testThreadSafety() : ChemistryTest.cpp , cvtest.cpp , Serializer_FASTA_Test.cpp , Serializer_mz5_Test.cpp , PeptideTest.cpp , COMInitializerTest.cpp , DigestionTest.cpp , BinaryIndexStreamTest.cpp , AminoAcidTest.cpp
• testThreadSafetyWorker() : cvtest.cpp , Serializer_FASTA_Test.cpp , BinaryIndexStreamTest.cpp , PeptideTest.cpp , ChemistryTest.cpp , DigestionTest.cpp , AminoAcidTest.cpp , Serializer_mz5_Test.cpp , COMInitializerTest.cpp
• testThresholders : SpectrumList_PeakFilterTest.cpp
• testThresholdersSize : SpectrumList_PeakFilterTest.cpp
• testTime() : IterationListenerTest.cpp
• testToy() : PeakelPickerTest.cpp
• testToyExample() : PeakelGrowerTest.cpp
• testTraData() : IOTest.cpp , DiffTest.cpp , ReferencesTest.cpp
• testTransition() : ReferencesTest.cpp , DiffTest.cpp
• testTranslation() : Serializer_pepXML_Test.cpp
• testTrypticBSA() : DigestionTest.cpp
• testUpdateRequest() : MSDataCacheTest.cpp
• testUpperBound() : IntegerSetTest.cpp
• testUsage() : SpectrumListFactoryTest.cpp , ProteinListFactoryTest.cpp , IsotopeCalculatorTest.cpp
• testUserParam() : IOTest.cpp , diff_std_test.cpp
• testValidation() : DiffTest.cpp
• testVectorCustomPair() : OrderedPairTest.cpp
• testVectorDouble() : OrderedPairTest.cpp
• testVectorIO() : KwCVMapTest.cpp
• testVectorOrderedPair() : OrderedPairTest.cpp
• testWarpRT() : DataFetcherContainerTest.cpp
• testWeightedLeastSquares() : ParabolaTest.cpp
• testWrap() : ProteinListFactoryTest.cpp , SpectrumListFactoryTest.cpp
• testWrapActivation() : SpectrumListFactoryTest.cpp
• testWrapDefaultArrayLength() : SpectrumListFactoryTest.cpp
• testWrapMassAnalyzer() : SpectrumListFactoryTest.cpp
• testWrapMSLevel() : SpectrumListFactoryTest.cpp
• testWrapMZWindow() : SpectrumListFactoryTest.cpp
• testWrapPolarity() : SpectrumListFactoryTest.cpp
• testWrapScanTimeRange() : SpectrumListFactoryTest.cpp
• testWrapSortScanTime() : SpectrumListFactoryTest.cpp
• testWrapTitleMaker() : SpectrumListFactoryTest.cpp
• testWriteRead() : Serializer_mz5_Test.cpp , Serializer_FASTA_Test.cpp , Serializer_MGF_Test.cpp , Serializer_mzML_Test.cpp , Serializer_mzXML_Test.cpp , Serializer_mzML_Test.cpp , Serializer_traML_Test.cpp , Serializer_MGF_Test.cpp , Serializer_mz5_Test.cpp , Serializer_mzXML_Test.cpp , Serializer_MSn_Test.cpp , Serializer_FASTA_Test.cpp
• testWriteReadBMS1() : Serializer_MSn_Test.cpp
• testWriteReadBMS2() : Serializer_MSn_Test.cpp
• testWriteReadCMS1() : Serializer_MSn_Test.cpp
• testWriteReadCMS2() : Serializer_MSn_Test.cpp
• testWriteReadMS1() : Serializer_MSn_Test.cpp
• testWriteReadMS2() : Serializer_MSn_Test.cpp
• testZeroSamplesFilter() : SpectrumList_PeakFilterTest.cpp
• Text : FrequencyData.hpp
• textabc2_ : SHA1CalculatorTest.cpp
• textabc_ : SHA1CalculatorTest.cpp
• textBrown_ : SHA1CalculatorTest.cpp , SHA1_ostream_test.cpp
• Th : Chemistry.hpp
• Threonine : AminoAcid.hpp
• Ti : Chemistry.hpp
• Tiny : Image.hpp
• Tl : Chemistry.hpp
• Tm : Chemistry.hpp
• Top : Image.hpp
• trace() : matops.h
• transpose() : matops.h
• Tryptophan : AminoAcid.hpp
• TYPEDEF_SHARED_PTR : IdentData.hpp
• Tyrosine : AminoAcid.hpp