Serializer_mzML_Test.cpp File Reference

#include "Serializer_mzML.hpp"
#include "Diff.hpp"
#include "References.hpp"
#include "examples.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "boost/iostreams/positioning.hpp"
#include "pwiz/utility/misc/Std.hpp"
#include <cstring>

Go to the source code of this file.

Functions
void	testWriteRead (const MSData &msd, const Serializer_mzML::Config &config)
void	testWriteRead ()
int	main (int argc, char *argv[])

Variables
ostream *	os_ = 0

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Function Documentation

void testWriteRead	(	const MSData &	msd,
		const Serializer_mzML::Config &	config
	)

Definition at line 42 of file Serializer_mzML_Test.cpp.

References diff(), os_, pwiz::msdata::Serializer_mzML::read(), pwiz::identdata::References::resolve(), unit_assert, and pwiz::msdata::Serializer_mzML::write().

{
    if (os_) *os_ << "testWriteRead() " << config << endl;

    Serializer_mzML mzmlSerializer(config);

    ostringstream oss;
    mzmlSerializer.write(oss, msd);

    if (os_) *os_ << "oss:\n" << oss.str() << endl; 

    shared_ptr<istringstream> iss(new istringstream(oss.str()));
    MSData msd2;
    mzmlSerializer.read(iss, msd2);

    References::resolve(msd2);

    Diff<MSData, DiffConfig> diff(msd, msd2);
    if (os_ && diff) *os_ << diff << endl; 
    unit_assert(!diff);
}

void testWriteRead

(

)

Definition at line 65 of file Serializer_mzML_Test.cpp.

References pwiz::msdata::Serializer_mzML::Config::binaryDataEncoderConfig, pwiz::msdata::Serializer_mzML::Config::indexed, pwiz::identdata::examples::initializeTiny(), pwiz::msdata::BinaryDataEncoder::Config::precision, testWriteRead(), and unit_assert.

{
    MSData msd;
    examples::initializeTiny(msd);

    Serializer_mzML::Config config;
    unit_assert(config.binaryDataEncoderConfig.precision == BinaryDataEncoder::Precision_64);
    testWriteRead(msd, config);

    config.binaryDataEncoderConfig.precision = BinaryDataEncoder::Precision_32;
    testWriteRead(msd, config);

    config.indexed = false;
    testWriteRead(msd, config);

    // TODO: test with compression 
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 84 of file Serializer_mzML_Test.cpp.

References e(), os_, TEST_EPILOG, TEST_FAILED, TEST_PROLOG, and testWriteRead().

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        testWriteRead();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}

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Variable Documentation

ostream* os_ = 0

Definition at line 39 of file Serializer_mzML_Test.cpp.