Serializer_Text_Test.cpp File Reference

#include "pwiz/utility/misc/unit.hpp"
#include "IdentData.hpp"
#include "Serializer_Text.hpp"
#include "TextWriter.hpp"
#include "examples.hpp"
#include "pwiz/utility/misc/Std.hpp"

Go to the source code of this file.

Macros
#define	PWIZ_SOURCE

Functions
void	testSerializeRead ()
void	testSerializeWrite ()
void	test ()
int	main (int argc, char **argv)

Variables
ostream *	os_ = 0

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Macro Definition Documentation

#define PWIZ_SOURCE

Definition at line 23 of file Serializer_Text_Test.cpp.

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Function Documentation

void testSerializeRead

(

)

Definition at line 37 of file Serializer_Text_Test.cpp.

References os_, and pwiz::identdata::Serializer_Text::read().

Referenced by test().

{
    if (os_)
        (*os_) << "*** Beginning testSerializeRead() ***\n";
    
    string testStr = "scan\trt\tmz\tscore\tscoretype\tpeptide\tprotein\n"
        "1\t1.01\t100.1\t0.5\tmascot\tVAGWE\tvague protein\n"
        "2\t2.02\t200.0\t0.9\tmascot\tCERTAIN\tcertain protein\n";

    shared_ptr<istringstream> iss(new istringstream(testStr));
    
    IdentData mzid;
    Serializer_Text serializer;
    serializer.read(iss, mzid);

    
    if (os_)
    {
        (*os_) << "mzIdentML output:\n";
        TextWriter tw(*os_);
        tw(mzid);
    }
    
    if (os_)
        (*os_) << "*** Ending testSerializeRead() ***\n";
}

void testSerializeWrite

(

)

Definition at line 64 of file Serializer_Text_Test.cpp.

References pwiz::identdata::examples::initializeBasicSpectrumIdentification(), os_, and pwiz::identdata::Serializer_Text::write().

Referenced by test().

{
    if (os_)
        (*os_) << "*** Beginning testSerializeWrite() ***\n";

    ostringstream oss;
    IdentData mzid;
    initializeBasicSpectrumIdentification(mzid);

    Serializer_Text serializer;
    serializer.write(oss, mzid);

    if (os_)
        (*os_) << oss.str() << endl;

    if (os_)
        (*os_) << "*** Ending testSerializeRead() ***\n";
}

void test

(

)

Definition at line 83 of file Serializer_Text_Test.cpp.

References testSerializeRead(), and testSerializeWrite().

{
    testSerializeRead();
    testSerializeWrite();
}

int main	(	int	argc,
		char **	argv
	)

Definition at line 89 of file Serializer_Text_Test.cpp.

References e(), os_, test(), TEST_EPILOG, TEST_FAILED, and TEST_PROLOG.

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        test();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}

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Variable Documentation

ostream* os_ = 0

Definition at line 35 of file Serializer_Text_Test.cpp.