PeptideID_pepXMLTest.cpp File Reference

#include "pwiz/utility/misc/Std.hpp"
#include <cstring>
#include "PeptideID_pepXML.hpp"
#include "pwiz/utility/minimxml/SAXParser.hpp"
#include "pwiz/utility/misc/unit.hpp"

Go to the source code of this file.

Functions
void	testIStream ()
void	testFilename ()
int	main (int argc, char *argv[])

Variables
ostream *	os_
const char *	samplePepXML = "</msms_pipeline_analysis>\n"

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Function Documentation

void testIStream

(

)

Definition at line 55 of file PeptideID_pepXMLTest.cpp.

References e(), pwiz::peptideid::PeptideID::Record::nativeID, pwiz::peptideid::PeptideID::Record::normalizedScore, pwiz::peptideid::PeptideID_pepXml::record(), samplePepXML, pwiz::peptideid::PeptideID::Record::sequence, unit_assert, and unit_assert_equal.

{
    istringstream xml (samplePepXML);

    PeptideID_pepXml ppXml(&xml);

    PeptideID::Location loc("1", 1.0, 0.);
    PeptideID::Record bf = ppXml.record(loc);

    unit_assert(bf.nativeID == "1");
    unit_assert(bf.sequence == "ABC");
    unit_assert_equal(bf.normalizedScore, 0.9, 1e-15);
}

void testFilename

(

)

Definition at line 69 of file PeptideID_pepXMLTest.cpp.

References e(), pwiz::peptideid::PeptideID::Record::nativeID, pwiz::peptideid::PeptideID::Record::normalizedScore, pwiz::peptideid::PeptideID_pepXml::record(), pwiz::peptideid::PeptideID::Record::sequence, unit_assert, and unit_assert_equal.

{
    ifstream xml ("test.pep.xml");

    PeptideID_pepXml ppXml(&xml);


    PeptideID::Location loc("1", 1.0, 0.);
    PeptideID::Record bf = ppXml.record(loc);

    unit_assert(bf.nativeID == "1");
    unit_assert(bf.sequence == "ABC");
    unit_assert_equal(bf.normalizedScore, 0.9, 1e-15);
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 84 of file PeptideID_pepXMLTest.cpp.

References e(), os_, TEST_EPILOG, TEST_FAILED, TEST_PROLOG, and testIStream().

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        testIStream();
        //testFilename();
        //testDone();
        //testBadXML();
        //testNested();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }
     
    TEST_EPILOG
}

---

Variable Documentation

ostream* os_

Definition at line 34 of file PeptideID_pepXMLTest.cpp.

const char* samplePepXML = "</msms_pipeline_analysis>\n"

Definition at line 36 of file PeptideID_pepXMLTest.cpp.