PeptideID_flatTest.cpp File Reference

#include "pwiz/utility/misc/Std.hpp"
#include <cstring>
#include "PeptideID_flat.hpp"
#include "pwiz/utility/minimxml/SAXParser.hpp"
#include "pwiz/utility/misc/unit.hpp"

Go to the source code of this file.

Functions
void	testIStream ()
void	testMSInspectIStream ()
int	main (int argc, char *argv[])

Variables
ostream *	os_
const char *	sampleFlat = "2\t2000\t500.0\t0.7\tDEF\n"
const char *	sampleMSI = "4 7.116 801.4013 800.3538 18.389582 1 1 0.6249515 1.6089915 1.3883085 3 698 713 1\n"

---

Function Documentation

void testIStream

(

)

Definition at line 48 of file PeptideID_flatTest.cpp.

References e(), pwiz::peptideid::PeptideID::Record::nativeID, pwiz::peptideid::PeptideID::Record::normalizedScore, pwiz::peptideid::PeptideID_flat::record(), sampleFlat, pwiz::peptideid::PeptideID::Record::sequence, unit_assert, and unit_assert_equal.

Referenced by main().

{
    istringstream data (sampleFlat);

    PeptideID_flat ppFlat(&data, shared_ptr<FlatRecordBuilder>(new FlatRecordBuilder));

    PeptideID::Location loc("1", 1000., 0);
    PeptideID::Record bf = ppFlat.record(loc);

    unit_assert(bf.nativeID == "1");
    unit_assert(bf.sequence == "ABC");
    unit_assert_equal(bf.normalizedScore, 0.9, 1e-14);
}

void testMSInspectIStream

(

)

Definition at line 62 of file PeptideID_flatTest.cpp.

References e(), pwiz::peptideid::PeptideID::Record::nativeID, pwiz::peptideid::PeptideID::Record::normalizedScore, pwiz::peptideid::PeptideID_flat::record(), sampleMSI, pwiz::peptideid::PeptideID::Record::sequence, unit_assert, and unit_assert_equal.

Referenced by main().

{
    istringstream data (sampleMSI);

    PeptideID_flat ppFlat(&data, shared_ptr<FlatRecordBuilder>(new MSInspectRecordBuilder()));

    PeptideID::Location loc("1", 2.248, 878.889);
    PeptideID::Record bf = ppFlat.record(loc);

    unit_assert(bf.nativeID == "1");
    unit_assert(bf.sequence == "");
    unit_assert_equal(bf.normalizedScore, 0.05977635, 1e-14);
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 91 of file PeptideID_flatTest.cpp.

References e(), os_, TEST_EPILOG, TEST_FAILED, TEST_PROLOG, testIStream(), and testMSInspectIStream().

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        testIStream();
        testMSInspectIStream();
        //testFilename();
        //testDone();
        //testBadXML();
        //testNested();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }
     
    TEST_EPILOG
}

---

Variable Documentation

ostream* os_

Definition at line 34 of file PeptideID_flatTest.cpp.

const char* sampleFlat = "2\t2000\t500.0\t0.7\tDEF\n"

Definition at line 36 of file PeptideID_flatTest.cpp.

Referenced by testIStream().

const char* sampleMSI = "4 7.116 801.4013 800.3538 18.389582 1 1 0.6249515 1.6089915 1.3883085 3 698 713 1\n"

Definition at line 40 of file PeptideID_flatTest.cpp.

Referenced by testMSInspectIStream().