IsotopeEnvelopeEstimatorTest.cpp File Reference

#include "IsotopeEnvelopeEstimator.hpp"
#include "IsotopeCalculator.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/Std.hpp"
#include <cstring>

Go to the source code of this file.

Functions
void	testInstantiationWithNull ()
void	test ()
int	main (int argc, char *argv[])

Variables
ostream *	os_ = 0

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Function Documentation

void testInstantiationWithNull

(

)

Definition at line 38 of file IsotopeEnvelopeEstimatorTest.cpp.

References os_.

Referenced by main().

{
    try 
    {
        IsotopeEnvelopeEstimator::Config config;
        IsotopeEnvelopeEstimator estimator(config);
    }
    catch (...)
    {
        if (os_) *os_ << "Null IsotopeCalculator* check ok.\n";
        return;
    }

    throw runtime_error("Failed to check for null IsotopeCalculator*.");
}

void test

(

)

Definition at line 55 of file IsotopeEnvelopeEstimatorTest.cpp.

References pwiz::chemistry::IsotopeEnvelopeEstimator::Config::isotopeCalculator, pwiz::chemistry::IsotopeEnvelopeEstimator::isotopeEnvelope(), and os_.

{
    const double abundanceCutoff = .01;
    const double massPrecision = .1; 
    IsotopeCalculator isotopeCalculator(abundanceCutoff, massPrecision);

    IsotopeEnvelopeEstimator::Config config;
    config.isotopeCalculator = &isotopeCalculator;

    IsotopeEnvelopeEstimator estimator(config);
 
    if (os_)
        for (int mass=100; mass<=3000; mass+=100)
            *os_ << mass << ":\n" << estimator.isotopeEnvelope(mass) << endl;

    // TODO: external verification of these estimates
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 74 of file IsotopeEnvelopeEstimatorTest.cpp.

References e(), os_, test(), TEST_EPILOG, TEST_FAILED, TEST_PROLOG, and testInstantiationWithNull().

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        if (os_) *os_ << "IsotopeEnvelopeEstimatorTest\n";
        testInstantiationWithNull();
        test();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}

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Variable Documentation

ostream* os_ = 0

Definition at line 35 of file IsotopeEnvelopeEstimatorTest.cpp.