ReferencesTest.cpp File Reference

#include "References.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/Std.hpp"
#include "pwiz/utility/minimxml/XMLWriter.hpp"

Go to the source code of this file.

Functions
void	testTransition ()
void	testTraData ()
void	test ()
int	main (int argc, char *argv[])

Variables
ostream *	os_ = 0

---

Function Documentation

void testTransition

(

)

Definition at line 38 of file ReferencesTest.cpp.

References pwiz::tradata::Transition::compoundPtr, pwiz::tradata::TraData::compoundPtrs, MS_peak_intensity, MS_theoretical_mass, os_, pwiz::tradata::Transition::peptidePtr, pwiz::tradata::TraData::peptidePtrs, pwiz::identdata::References::resolve(), and unit_assert.

{
    if (os_) *os_ << "testTransition()\n"; 

    Transition transition;
    transition.peptidePtr = PeptidePtr(new Peptide("pep1"));
    transition.peptidePtr->proteinPtrs.push_back(ProteinPtr(new Protein("prot1")));
    transition.compoundPtr = CompoundPtr(new Compound("cmp1"));

    TraData td;
    td.peptidePtrs.push_back(PeptidePtr(new Peptide("pep1")));
    td.peptidePtrs.back()->set(MS_theoretical_mass, 123);
    td.peptidePtrs.back()->proteinPtrs.push_back(ProteinPtr(new Protein("prot1")));
    td.peptidePtrs.back()->proteinPtrs.back()->sequence = "ABCD";

    td.compoundPtrs.push_back(CompoundPtr(new Compound("cmp1")));
    td.compoundPtrs.back()->retentionTimes.push_back(RetentionTime());
    td.compoundPtrs.back()->retentionTimes.back().set(MS_peak_intensity, 123);

    References::resolve(transition, td);

    unit_assert(transition.peptidePtr->cvParam(MS_theoretical_mass).value == "123");
    unit_assert(transition.peptidePtr->proteinPtrs.back().get());
    unit_assert(transition.peptidePtr->proteinPtrs.back()->sequence == "ABCD");
    unit_assert(!transition.compoundPtr->retentionTimes.empty());
    unit_assert(transition.compoundPtr->retentionTimes.back().cvParam(MS_peak_intensity).value == "123");
}

void testTraData

(

)

Definition at line 67 of file ReferencesTest.cpp.

References pwiz::tradata::Transition::compoundPtr, pwiz::tradata::TraData::compoundPtrs, MS_peak_intensity, MS_theoretical_mass, pwiz::tradata::Transition::peptidePtr, pwiz::tradata::TraData::peptidePtrs, pwiz::tradata::TraData::proteinPtrs, pwiz::identdata::References::resolve(), pwiz::tradata::TraData::transitions, and unit_assert.

{
    TraData td;
    td.proteinPtrs.push_back(ProteinPtr(new Protein("prot1")));
    td.proteinPtrs.back()->sequence = "ABCD";

    td.peptidePtrs.push_back(PeptidePtr(new Peptide("pep1")));
    td.peptidePtrs.back()->set(MS_theoretical_mass, 123);
    td.peptidePtrs.back()->proteinPtrs.push_back(ProteinPtr(new Protein("prot1")));

    td.compoundPtrs.push_back(CompoundPtr(new Compound("cmp1")));
    td.compoundPtrs.back()->retentionTimes.push_back(RetentionTime());
    td.compoundPtrs.back()->retentionTimes.back().set(MS_peak_intensity, 123);

    td.transitions.push_back(Transition());
    Transition& transition = td.transitions.back();
    transition.peptidePtr = PeptidePtr(new Peptide("pep1"));
    transition.peptidePtr->proteinPtrs.push_back(ProteinPtr(new Protein("prot1")));
    transition.compoundPtr = CompoundPtr(new Compound("cmp1"));

    References::resolve(td);

    unit_assert(transition.peptidePtr->cvParam(MS_theoretical_mass).value == "123");
    unit_assert(transition.peptidePtr->proteinPtrs.back().get());
    unit_assert(transition.peptidePtr->proteinPtrs.back()->sequence == "ABCD");
    unit_assert(!transition.compoundPtr->retentionTimes.empty());
    unit_assert(transition.compoundPtr->retentionTimes.back().cvParam(MS_peak_intensity).value == "123");
}

void test

(

)

Definition at line 97 of file ReferencesTest.cpp.

References testTraData(), and testTransition().

{
    testTransition();
    testTraData();
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 104 of file ReferencesTest.cpp.

References e(), os_, test(), TEST_EPILOG, TEST_FAILED, and TEST_PROLOG_EX.

{
    TEST_PROLOG_EX(argc, argv, "_TraData")

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        test();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}

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Variable Documentation

ostream* os_ = 0

Definition at line 34 of file ReferencesTest.cpp.