KwCVMapTest.cpp File Reference

#include "KwCVMap.hpp"
#include "examples.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/Std.hpp"

Go to the source code of this file.

Functions
void	testCVMap ()
void	testRegexCVMap ()
void	testCVMapIO ()
void	testRegexCVMapIO ()
void	testVectorIO ()
void	test ()
int	main (int argc, char *argv[])

Variables
ostream *	os_ = 0

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Function Documentation

void testCVMap

(

)

Definition at line 35 of file KwCVMapTest.cpp.

References pwiz::identdata::CVMap::cvid, pwiz::identdata::CVMap::keyword, MS_sample_name, os_, and unit_assert.

Referenced by test().

{
    if (os_) (*os_) << "\ntestCVMap()\n";

    CVMap map("sample name", MS_sample_name,
              "/mzIdentML/AnalysisSampleCollection/Sample/cvParam");

    unit_assert(map.keyword == "sample name");
    unit_assert(map.cvid == MS_sample_name);
    unit_assert(map("sample name"));
    unit_assert(!map("potato"));
}

void testRegexCVMap

(

)

Definition at line 48 of file KwCVMapTest.cpp.

References pwiz::identdata::CVMap::cvid, MS_sample_name, os_, and unit_assert.

Referenced by test().

{
    if (os_) (*os_) << "\ntestRegexCVMap()\n";
    
    RegexCVMap rx("[Ss]ample[ ]+[Nn]ame", MS_sample_name,
                  "/mzIdentML/AnalysisSampleCollection/Sample/cvParam");

    //unit_assert(map.keyword == "sample name");
    unit_assert(rx.cvid == MS_sample_name);
    unit_assert(rx("sample name"));
    unit_assert(rx("Sample name"));
    unit_assert(rx("sample Name"));
    unit_assert(rx("Sample    Name"));
    unit_assert(!rx("turnip"));
}

void testCVMapIO

(

)

Definition at line 64 of file KwCVMapTest.cpp.

References MS_sample_name, os_, and unit_assert.

Referenced by test().

{
    if (os_) (*os_) << "\ntestCVMapIO()\n";

    CVMap map("sample name", MS_sample_name,
              "/mzIdentML/AnalysisSampleCollection/Sample/cvParam");
    stringstream ss;

    ss << map;

    if (os_) (*os_) << "insertion operator:\n" << ss.str();
    unit_assert(ss.str() == "plain\tsample name\tMS:1000002"
                "\t/mzIdentML/AnalysisSampleCollection/Sample/cvParam\n");

    // Test CVMapPtr extraction
    CVMapPtr cvmPtr;
    ss >>  cvmPtr;

    if (os_) (*os_) << "NULL pointer returned?"
                    << (cvmPtr.get() == NULL) << endl;
    unit_assert(cvmPtr.get());
    
    if (os_) (*os_) << typeid(cvmPtr.get()).name() << endl;
    unit_assert(typeid(cvmPtr.get()).name() == typeid(CVMap*).name());
    
    if (os_) (*os_) << "keyword: " << cvmPtr->keyword << endl;
    if (os_) (*os_) << "cvid: " << cvmPtr->cvid << endl;
    unit_assert(cvmPtr->keyword == "sample name");
    unit_assert(cvmPtr->cvid == MS_sample_name);
}

void testRegexCVMapIO

(

)

Definition at line 95 of file KwCVMapTest.cpp.

References MS_sample_name, os_, and unit_assert.

Referenced by test().

{
    if (os_) (*os_) << "\ntestRegexCVMapIO()\n";
    
    RegexCVMap map("[Ss]ample [Nn]ame", MS_sample_name,
              "/mzIdentML/AnalysisSampleCollection/Sample/cvParam");
    stringstream ss;

    ss << map;

    if (os_) (*os_) << "insertion operator:\n" << ss.str();
    unit_assert(ss.str() == "regex\t[Ss]ample [Nn]ame\tMS:1000002\t"
                "/mzIdentML/AnalysisSampleCollection/Sample/cvParam\n");

    // Test CVMapPtr extraction
    CVMapPtr cvmPtr;
    ss >>  cvmPtr;

    if (os_) (*os_) << "NULL pointer returned?"
                    << (cvmPtr.get() == NULL) << endl;
    unit_assert(cvmPtr.get());
    
    if (os_) (*os_) << typeid(cvmPtr.get()).name() << endl;
    unit_assert(typeid(cvmPtr.get()).name() == typeid(CVMap*).name());
    
    if (os_) (*os_) << "keyword: " << cvmPtr->keyword << endl;
    if (os_) (*os_) << "cvid: " << cvmPtr->cvid << endl;
    unit_assert(cvmPtr->keyword == "[Ss]ample [Nn]ame");
    unit_assert(cvmPtr->cvid == MS_sample_name);
}

void testVectorIO

(

)

Definition at line 126 of file KwCVMapTest.cpp.

References os_, and unit_assert.

Referenced by test().

{
    if (os_) (*os_) << "\ntestVectorIO()\n";
    
    const char* file =
        "plain\tsample name\tMS:1000002\t/mzIdentML/AnalysisSampleCollection/Sample/cvParam\n"
        "regex\t[Aa]ccuracy[ ]*\tMS:1000014\t/mzIdentML\n"
        "regex\t[Ss]can start time[\\.]?\tMS:1000016\t/mzIdentML\n";

    if (os_) (*os_) << "file used:\n" << file << endl;
    istringstream iss(file);

    vector<CVMapPtr> mappings;
    iss >> mappings;

    if (os_) (*os_) << "Records read in:\n";
    for (vector<CVMapPtr>::iterator i=mappings.begin(); i!=mappings.end(); i++)
    {
        if (os_) (*os_) << *i;
    }

    // TODO add some record specific checking here.
    
    ostringstream oss;

    oss << mappings;

    if (os_) (*os_) << "\nResulting vector output:\n";
    if (os_) (*os_) << oss.str() << endl;
    unit_assert(oss.str() == file);
}

void test

(

)

Definition at line 158 of file KwCVMapTest.cpp.

References testCVMap(), testCVMapIO(), testRegexCVMap(), testRegexCVMapIO(), and testVectorIO().

{
    testCVMap();
    testRegexCVMap();
    testCVMapIO();
    testRegexCVMapIO();
    testVectorIO();
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 167 of file KwCVMapTest.cpp.

References e(), os_, test(), TEST_EPILOG, TEST_FAILED, and TEST_PROLOG.

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        test();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}

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Variable Documentation

ostream* os_ = 0

Definition at line 32 of file KwCVMapTest.cpp.