MSDataAnalyzerTest.cpp File Reference

#include "MSDataAnalyzer.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/Std.hpp"
#include <cstring>

Go to the source code of this file.

Classes
struct	SimpleAnalyzer
struct	SimpleProgressCallback
struct	CancelProgressCallback

Functions
void	test ()
int	main (int argc, char *argv[])

Variables
ostream *	os_ = 0

---

Function Documentation

void test

(

)

Definition at line 109 of file MSDataAnalyzerTest.cpp.

References anal(), pwiz::analysis::MSDataAnalyzerDriver::analyze(), SimpleAnalyzer::closed, SimpleProgressCallback::count, CancelProgressCallback::count, SimpleProgressCallback::iterationsPerCallback(), SimpleAnalyzer::opened, os_, pwiz::msdata::MSData::run, pwiz::msdata::Run::spectrumListPtr, Status_Ok, unit_assert, and SimpleAnalyzer::updateCount.

{
    if (os_) *os_ << "test()\n"; 

    // set up analyzers

    MSDataAnalyzerContainer analyzers;
    analyzers.push_back(MSDataAnalyzerPtr(new SimpleAnalyzer(23))); // request index 23
    analyzers.push_back(MSDataAnalyzerPtr(new SimpleAnalyzer(17))); // request index 17

    unit_assert(analyzers.size() == 2);
    for (MSDataAnalyzerContainer::const_iterator it=analyzers.begin(); it!=analyzers.end(); ++it)
    {
        const SimpleAnalyzer& anal = dynamic_cast<const SimpleAnalyzer&>(**it);
        unit_assert(!anal.opened);
        unit_assert(anal.updateCount == 0);
        unit_assert(!anal.closed);
    }

    // instantiate MSData object

    MSData dummy;
    SpectrumListSimplePtr sl(new SpectrumListSimple);
    const int spectrumCount = 30;
    for (int i=0; i<spectrumCount; i++) 
    {
        sl->spectra.push_back(SpectrumPtr(new Spectrum));
        sl->spectra.back()->index = i;
    }
    dummy.run.spectrumListPtr = sl; 

    // run driver

    MSDataAnalyzerDriver driver(analyzers);
    SimpleProgressCallback callback;
    MSDataAnalyzerDriver::Status status = driver.analyze(dummy, &callback);

    unit_assert(status == MSDataAnalyzerDriver::Status_Ok);

    for (MSDataAnalyzerContainer::const_iterator it=analyzers.begin(); it!=analyzers.end(); ++it)
    {
        const SimpleAnalyzer& anal = dynamic_cast<const SimpleAnalyzer&>(**it);
        unit_assert(anal.opened);
        unit_assert(anal.updateCount == 1);
        unit_assert(anal.closed);
    }

    unit_assert(callback.count == spectrumCount/callback.iterationsPerCallback() + 1);

    // run driver again with cancel callback

    if (os_) *os_ << "testing cancel callback:\n";

    CancelProgressCallback cancelCallback;
    status = driver.analyze(dummy, &cancelCallback);

    unit_assert(status == MSDataAnalyzerDriver::Status_Cancel);

    if (os_) *os_ << "cancelled!\n";

    for (MSDataAnalyzerContainer::const_iterator it=analyzers.begin(); it!=analyzers.end(); ++it)
    {
        const SimpleAnalyzer& anal = dynamic_cast<const SimpleAnalyzer&>(**it);
        unit_assert(anal.opened);
        unit_assert(anal.updateCount == 0);
        unit_assert(!anal.closed);
    }

    unit_assert(cancelCallback.count == 2); 
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 181 of file MSDataAnalyzerTest.cpp.

References e(), os_, test(), TEST_EPILOG, TEST_FAILED, and TEST_PROLOG.

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        test();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}

---

Variable Documentation

ostream* os_ = 0

Definition at line 34 of file MSDataAnalyzerTest.cpp.