SpectrumInfoTest.cpp File Reference

#include "SpectrumInfo.hpp"
#include "pwiz/data/msdata/examples.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/Std.hpp"
#include <cstring>

Go to the source code of this file.

Functions
void	test ()
int	main (int argc, char *argv[])

Variables
ostream *	os_ = 0
const double	epsilon_ = 1e-6

---

Function Documentation

void test

(

)

Definition at line 40 of file SpectrumInfoTest.cpp.

References pwiz::msdata::SpectrumInfo::clearBinaryData(), pwiz::msdata::SpectrumInfo::data, epsilon_, pwiz::msdata::SpectrumInfo::id, pwiz::msdata::SpectrumInfo::index, pwiz::identdata::examples::initializeTiny(), pwiz::msdata::SpectrumInfo::massAnalyzerType, MS_QIT, pwiz::msdata::SpectrumInfo::msLevel, pwiz::msdata::SpectrumInfo::mzHigh, pwiz::msdata::SpectrumInfo::mzLow, os_, pwiz::msdata::SpectrumInfo::precursors, pwiz::msdata::SpectrumInfo::retentionTime, pwiz::msdata::MSData::run, pwiz::msdata::SpectrumInfo::scanNumber, pwiz::msdata::Run::spectrumListPtr, unit_assert, unit_assert_equal, and pwiz::msdata::SpectrumInfo::update().

{
    if (os_) *os_ << "test()\n"; 

    MSData tiny;
    examples::initializeTiny(tiny);

    SpectrumInfo info;
    info.update(*tiny.run.spectrumListPtr->spectrum(0));
    
    unit_assert(info.index == 0);
    unit_assert(info.id == "scan=19");
    unit_assert(info.scanNumber == 19);
    unit_assert(info.massAnalyzerType == MS_QIT);
    unit_assert(info.msLevel == 1);
    unit_assert_equal(info.retentionTime, 353.43, epsilon_);
    unit_assert_equal(info.mzLow, 400.39, epsilon_);
    unit_assert_equal(info.mzHigh, 1795.56, epsilon_);
    unit_assert(info.precursors.empty());

    info.update(*tiny.run.spectrumListPtr->spectrum(0), true);
    unit_assert(info.data.size() == 15);

    info.update(*tiny.run.spectrumListPtr->spectrum(0), false);
    unit_assert(info.data.size() == 0);
    unit_assert(info.data.capacity() == 0);

    info.update(*tiny.run.spectrumListPtr->spectrum(1), true);
    unit_assert(info.index == 1);
    unit_assert(info.id == "scan=20");
    unit_assert(info.scanNumber == 20);
    unit_assert(info.massAnalyzerType == MS_QIT);
    unit_assert(info.msLevel == 2);
    unit_assert_equal(info.retentionTime, 359.43, epsilon_);
    unit_assert_equal(info.mzLow, 320.39, epsilon_);
    unit_assert_equal(info.mzHigh, 1003.56, epsilon_);
    unit_assert(info.precursors.size() == 1);
    unit_assert(info.precursors[0].index == 0);
    unit_assert_equal(info.precursors[0].mz, 445.34, epsilon_);
    unit_assert_equal(info.precursors[0].intensity, 120053, epsilon_);
    unit_assert(info.precursors[0].charge == 2);
    unit_assert(info.data.size() == 10);

    info.clearBinaryData();
    unit_assert(info.data.size() == 0);
    unit_assert(info.data.capacity() == 0);

    if (os_) *os_ << "ok\n";
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 91 of file SpectrumInfoTest.cpp.

References e(), os_, test(), TEST_EPILOG, TEST_FAILED, and TEST_PROLOG.

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        test();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}

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Variable Documentation

ostream* os_ = 0

Definition at line 36 of file SpectrumInfoTest.cpp.

const double epsilon_ = 1e-6

Definition at line 37 of file SpectrumInfoTest.cpp.