SearchNeighborhoodCalculatorTest.cpp File Reference

#include "SearchNeighborhoodCalculator.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/minimxml/XMLWriter.hpp"

Go to the source code of this file.

Functions
void	testNormalDistribution ()
void	test ()
int	main (int argc, char *argv[])

Variables
ostream *	os_ = 0

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Function Documentation

void testNormalDistribution

(

)

Definition at line 36 of file SearchNeighborhoodCalculatorTest.cpp.

Referenced by main().

{
    // TODO
    // Test that folded normal distribution is correctly calculated from normal distribution parameters
    // Test that scoring function is correct
}

void test

(

)

Definition at line 43 of file SearchNeighborhoodCalculatorTest.cpp.

References pwiz::data::pepxml::SpectrumQuery::assumedCharge, pwiz::eharmony::SearchNeighborhoodCalculator::close(), pwiz::data::peakdata::Feature::mz, os_, pwiz::data::pepxml::SpectrumQuery::precursorNeutralMass, pwiz::data::peakdata::Feature::retentionTime, pwiz::data::pepxml::SpectrumQuery::retentionTimeSec, unit_assert, pwiz::data::peakdata::Feature::write(), and pwiz::data::pepxml::SpectrumQuery::write().

{
    if (os_) *os_ << "test() ..." << endl;

    SearchNeighborhoodCalculator snc;

    SpectrumQuery sq;
    sq.precursorNeutralMass = 1;
    sq.assumedCharge = 2;
    sq.retentionTimeSec = 40;

    Feature f;
    f.mz = 1.510;
    f.retentionTime = 98;

    unit_assert(snc.close(sq,f));
    if (os_)
        {
            XMLWriter writer(*os_);
            sq.write(writer);
            f.write(writer);

        }
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 68 of file SearchNeighborhoodCalculatorTest.cpp.

References e(), os_, test(), and testNormalDistribution().

{
    try
        {
            if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
            if (os_) *os_ << "SearchNeighborhoodCalculatorTest: " << endl;
            test();
            testNormalDistribution();

        }

    catch (std::exception& e)
        {
            cerr << e.what() << endl;
            return 1;

        }

    catch (...)
        {
            cerr << "Caught unknown exception.\n";
            return 1;

        }

}

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Variable Documentation

ostream* os_ = 0

Definition at line 34 of file SearchNeighborhoodCalculatorTest.cpp.