LegacyAdapterTest.cpp File Reference

#include "LegacyAdapter.hpp"
#include "pwiz/data/common/CVTranslator.hpp"
#include "TextWriter.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "boost/lambda/lambda.hpp"
#include "boost/lambda/bind.hpp"
#include "pwiz/utility/misc/Std.hpp"
#include <cstring>

Go to the source code of this file.

Functions
void	testModelAndManufacturer ()
void	testIonisation ()
void	testAnalyzer ()
void	testDetector ()
void	testInstrumentConfiguration ()
void	testSoftware ()
void	test ()
int	main (int argc, char *argv[])

Variables
ostream *	os_ = 0

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Function Documentation

void testModelAndManufacturer

(

)

Definition at line 43 of file LegacyAdapterTest.cpp.

References pwiz::data::ParamContainer::cvParams, pwiz::msdata::LegacyAdapter_Instrument::manufacturer(), pwiz::msdata::LegacyAdapter_Instrument::manufacturerAndModel(), pwiz::msdata::LegacyAdapter_Instrument::model(), os_, unit_assert, and pwiz::data::ParamContainer::userParams.

Referenced by testInstrumentConfiguration().

{
    if (os_) *os_ << "testModelAndManufacturer()\n"; 

    InstrumentConfiguration instrumentConfiguration;
    CVTranslator cvTranslator;
    LegacyAdapter_Instrument adapter(instrumentConfiguration, cvTranslator);

    unit_assert(instrumentConfiguration.cvParams.empty() && instrumentConfiguration.userParams.empty());

    adapter.manufacturerAndModel("dummy", "LTQ-FT");
    if (os_) *os_ << "manufacturer: " << adapter.manufacturer() << endl 
                  << "model: " << adapter.model() << endl;
    unit_assert(instrumentConfiguration.cvParams.size() == 1);
    unit_assert(instrumentConfiguration.userParams.empty());
    unit_assert(adapter.manufacturer() == "Thermo Scientific");
    unit_assert(adapter.model() == "LTQ FT");

    adapter.manufacturerAndModel("doobie", "420");
    if (os_) *os_ << "manufacturer: " << adapter.manufacturer() << endl 
                  << "model: " << adapter.model() << endl;
    unit_assert(instrumentConfiguration.cvParams.empty());
    unit_assert(instrumentConfiguration.userParams.size() == 2);
    unit_assert(adapter.manufacturer() == "doobie");
    unit_assert(adapter.model() == "420");

    adapter.manufacturerAndModel("dummy", "LTQ-FT");
    if (os_) *os_ << "manufacturer: " << adapter.manufacturer() << endl 
                  << "model: " << adapter.model() << endl;
    unit_assert(instrumentConfiguration.cvParams.size() == 1);
    unit_assert(instrumentConfiguration.userParams.empty());
    unit_assert(adapter.manufacturer() == "Thermo Scientific");
    unit_assert(adapter.model() == "LTQ FT");
}

void testIonisation

(

)

Definition at line 79 of file LegacyAdapterTest.cpp.

References pwiz::msdata::InstrumentConfiguration::componentList, pwiz::msdata::ComponentType_Source, pwiz::data::ParamContainer::cvParams, pwiz::msdata::LegacyAdapter_Instrument::ionisation(), os_, pwiz::msdata::ComponentList::source(), unit_assert, and pwiz::data::ParamContainer::userParams.

Referenced by testInstrumentConfiguration().

{
    InstrumentConfiguration instrumentConfiguration;
    instrumentConfiguration.componentList.push_back(Component(ComponentType_Source, 2));
    CVTranslator cvTranslator;
    LegacyAdapter_Instrument adapter(instrumentConfiguration, cvTranslator);

    adapter.ionisation(" esi\t");
    if (os_) *os_ << "ionisation: " << adapter.ionisation() << endl;
    unit_assert(instrumentConfiguration.componentList.source(0).cvParams.size() == 1);
    unit_assert(instrumentConfiguration.componentList.source(0).userParams.empty());
    unit_assert(adapter.ionisation() == "electrospray ionization");

    adapter.ionisation("goober");
    if (os_) *os_ << "ionisation: " << adapter.ionisation() << endl;
    unit_assert(instrumentConfiguration.componentList.source(0).cvParams.empty());
    unit_assert(instrumentConfiguration.componentList.source(0).userParams.size() == 1);
    unit_assert(adapter.ionisation() == "goober");

    adapter.ionisation(" Electrospray-Ionization");
    if (os_) *os_ << "ionisation: " << adapter.ionisation() << endl;
    unit_assert(instrumentConfiguration.componentList.source(0).cvParams.size() == 1);
    unit_assert(instrumentConfiguration.componentList.source(0).userParams.empty());
    unit_assert(adapter.ionisation() == "electrospray ionization");
}

void testAnalyzer

(

)

Definition at line 106 of file LegacyAdapterTest.cpp.

References pwiz::msdata::LegacyAdapter_Instrument::analyzer(), pwiz::msdata::ComponentList::analyzer(), pwiz::msdata::InstrumentConfiguration::componentList, pwiz::msdata::ComponentType_Analyzer, pwiz::data::ParamContainer::cvParams, os_, unit_assert, and pwiz::data::ParamContainer::userParams.

Referenced by testInstrumentConfiguration().

{
    InstrumentConfiguration instrumentConfiguration;
    instrumentConfiguration.componentList.push_back(Component(ComponentType_Analyzer, 2));
    CVTranslator cvTranslator;
    LegacyAdapter_Instrument adapter(instrumentConfiguration, cvTranslator);

    adapter.analyzer("IT");
    if (os_) *os_ << "analyzer: " << adapter.analyzer() << endl;
    unit_assert(instrumentConfiguration.componentList.analyzer(0).cvParams.size() == 1);
    unit_assert(instrumentConfiguration.componentList.analyzer(0).userParams.empty());
    unit_assert(adapter.analyzer() == "ion trap");

    adapter.analyzer("goober");
    if (os_) *os_ << "analyzer: " << adapter.analyzer() << endl;
    unit_assert(instrumentConfiguration.componentList.analyzer(0).cvParams.empty());
    unit_assert(instrumentConfiguration.componentList.analyzer(0).userParams.size() == 1);
    unit_assert(adapter.analyzer() == "goober");

    adapter.analyzer(" qit");
    if (os_) *os_ << "analyzer: " << adapter.analyzer() << endl;
    unit_assert(instrumentConfiguration.componentList.analyzer(0).cvParams.size() == 1);
    unit_assert(instrumentConfiguration.componentList.analyzer(0).userParams.empty());
    unit_assert(adapter.analyzer() == "quadrupole ion trap");
}

void testDetector

(

)

Definition at line 133 of file LegacyAdapterTest.cpp.

References pwiz::msdata::InstrumentConfiguration::componentList, pwiz::msdata::ComponentType_Detector, pwiz::data::ParamContainer::cvParams, pwiz::msdata::LegacyAdapter_Instrument::detector(), pwiz::msdata::ComponentList::detector(), os_, unit_assert, and pwiz::data::ParamContainer::userParams.

Referenced by testInstrumentConfiguration().

{
    InstrumentConfiguration instrumentConfiguration;
    instrumentConfiguration.componentList.push_back(Component(ComponentType_Detector, 3));
    CVTranslator cvTranslator;
    LegacyAdapter_Instrument adapter(instrumentConfiguration, cvTranslator);

    adapter.detector("emt");
    if (os_) *os_ << "detector: " << adapter.detector() << endl;
    unit_assert(instrumentConfiguration.componentList.detector(0).cvParams.size() == 1);
    unit_assert(instrumentConfiguration.componentList.detector(0).userParams.empty());
    unit_assert(adapter.detector() == "electron multiplier tube");

    adapter.detector("goober");
    if (os_) *os_ << "detector: " << adapter.detector() << endl;
    unit_assert(instrumentConfiguration.componentList.detector(0).cvParams.empty());
    unit_assert(instrumentConfiguration.componentList.detector(0).userParams.size() == 1);
    unit_assert(adapter.detector() == "goober");

    adapter.detector(" Electron   Multiplier ");
    if (os_) *os_ << "detector: " << adapter.detector() << endl;
    unit_assert(instrumentConfiguration.componentList.detector(0).cvParams.size() == 1);
    unit_assert(instrumentConfiguration.componentList.detector(0).userParams.empty());
    unit_assert(adapter.detector() == "electron multiplier");
}

void testInstrumentConfiguration

(

)

Definition at line 160 of file LegacyAdapterTest.cpp.

References testAnalyzer(), testDetector(), testIonisation(), and testModelAndManufacturer().

{
    testModelAndManufacturer();
    testIonisation();
    testAnalyzer();
    testDetector();
}

void testSoftware

(

)

Definition at line 169 of file LegacyAdapterTest.cpp.

References pwiz::data::CVParam::cvid, CVID_Unknown, MS_software, MS_Xcalibur, pwiz::msdata::LegacyAdapter_Software::name(), os_, pwiz::msdata::LegacyAdapter_Software::type(), unit_assert, and pwiz::msdata::LegacyAdapter_Software::version().

{
    SoftwarePtr software(new Software("abcd"));
    MSData msd;
    CVTranslator cvTranslator;
    LegacyAdapter_Software adapter(software, msd, cvTranslator);

    adapter.name(" XcaLibur  ");
    if (os_) *os_ << "software name: " << adapter.name() << endl;
    CVParam softwareParam = software->cvParamChild(MS_software);
    unit_assert(softwareParam.cvid == MS_Xcalibur); 
    unit_assert(adapter.name() == "Xcalibur");

    adapter.name("goober");
    if (os_) *os_ << "software name: " << adapter.name() << endl;
    softwareParam = software->cvParamChild(MS_software);
    unit_assert(softwareParam.cvid == CVID_Unknown); 
    unit_assert(adapter.name() == "goober");

    adapter.version("4.20");
    if (os_) *os_ << "software version: " << adapter.version() << endl;
    unit_assert(adapter.version() == "4.20");

    //adapter.type("acquisition");
    //if (os_) *os_ << "software type: " << adapter.type() << endl;
    //unit_assert(adapter.type() == "acquisition");

    adapter.type("analysis");
    if (os_) *os_ << "software type: " << adapter.type() << endl;
    unit_assert(adapter.type() == "analysis");
}

void test

(

)

Definition at line 202 of file LegacyAdapterTest.cpp.

References testInstrumentConfiguration(), and testSoftware().

{
    testInstrumentConfiguration();
    testSoftware();
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 209 of file LegacyAdapterTest.cpp.

References e(), os_, test(), TEST_EPILOG, TEST_FAILED, and TEST_PROLOG.

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        test();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}

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Variable Documentation

ostream* os_ = 0

Definition at line 40 of file LegacyAdapterTest.cpp.