- p -
- pages
: pwiz::identdata::BibliographicReference
- param
: Root
- param2
: Second
- param3
: Second
- parameters
: pwiz::calibration::CalibratorTrial::State
, pwiz::data::pepxml::SearchSummary
, pwiz::data::peakdata::Software
- parametersInitialEstimate
: pwiz::calibration::CalibratorTrial::Configuration
- parametersTrue
: pwiz::calibration::CalibratorTrial::Configuration
- paramGroupList_
: pwiz::msdata::mz5::ReferenceWrite_mz5
- paramGroupMapping_
: pwiz::msdata::mz5::ReferenceWrite_mz5
- paramGroupPtrs
: pwiz::data::ParamContainer
, pwiz::msdata::MSData
- paramList
: pwiz::msdata::mz5::SampleMZ5
, pwiz::msdata::mz5::SoftwareMZ5
, pwiz::msdata::mz5::ScanSettingMZ5
, pwiz::msdata::mz5::ComponentMZ5
, pwiz::msdata::mz5::InstrumentConfigurationMZ5
, pwiz::msdata::mz5::ProcessingMethodMZ5
, pwiz::msdata::mz5::ChromatogramMZ5
, pwiz::msdata::mz5::ScanMZ5
, pwiz::msdata::mz5::ScansMZ5
, pwiz::msdata::mz5::SpectrumMZ5
, pwiz::msdata::mz5::RunMZ5
, pwiz::msdata::mz5::ParamGroupMZ5
, pwiz::msdata::mz5::SourceFileMZ5
- params
: pwiz::analysis::MS2Deisotoper
, pwiz::analysis::MS2NoiseFilter
, pwiz::analysis::PrecursorMassFilter
- parent
: pwiz::identdata::Organization
- parent_file
: pwiz::data::pepxml::DataFilter
- parentsIsA
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- parentsPartOf
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- parentTolerance
: pwiz::identdata::SpectrumIdentificationProtocol
- parseCharacters
: pwiz::minimxml::SAXParser::Handler
- partialDiffOK
: pwiz::data::BaseDiffConfig
- passThreshold
: pwiz::identdata::SpectrumIdentificationItem
, pwiz::identdata::ProteinDetectionHypothesis
- pastMaxIndex
: SelectedIndexPredicate
- path
: pwiz::identdata::CVMap
- pathmask
: TestPathmask
- pathnameArray
: TestPathmask
- pattern
: pwiz::identdata::RegexCVMap
- peak
: pwiz::analysis::RegionAnalyzer::SpectrumStats
, pwiz::data::peakdata::HandlerPeak
- peakCount
: pwiz::frequency::PeakDetectorMatchedFilter::Score
- peakel
: pwiz::data::peakdata::HandlerPeakel
- peakelGrower_
: pwiz::analysis::FeatureDetectorPeakel
- peakelGrower_Proximity
: pwiz::analysis::FeatureDetectorPeakel::Config
- peakelPicker_
: pwiz::analysis::FeatureDetectorPeakel
- peakelPicker_Basic
: pwiz::analysis::FeatureDetectorPeakel::Config
- peakels
: pwiz::data::peakdata::Feature
- peakExtractor_
: pwiz::analysis::FeatureDetectorPeakel
- peakFamilies
: pwiz::data::peakdata::Scan
- peakFamilyDetector
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- peakFinder_
: pwiz::analysis::PeakExtractor
- peakFinder_SNR
: pwiz::analysis::FeatureDetectorPeakel::Config
- peakFitter_
: pwiz::analysis::PeakExtractor
- peakFitter_Parabola
: pwiz::analysis::FeatureDetectorPeakel::Config
- peakMaxCorrelationAngle
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- peaks
: pwiz::data::peakdata::PeakFamily
, pwiz::data::peakdata::Peakel
, ScanCacheStruct
, pwiz::utility::MSIHandler::Record
, pwiz::frequency::PeakDetectorMatchedFilter::Score
- peaksCount
: pwiz::msdata::SpectrumIdentityFromMzXML
, ScanHeaderStruct
- peakThresholdFactor
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- peptide
: pwiz::analysis::PepxmlRecordReader::record
, pwiz::data::pepxml::SearchHit
- peptide_id
: pwiz::analysis::Pseudo2DGel::Config
- peptideCount
: pwiz::eharmony::FeatureSequenced
- peptideEntries
: pwiz::eharmony::MSIAMTData
- peptideEvidence
: pwiz::identdata::SequenceCollection
- peptideEvidencePtr
: pwiz::identdata::SpectrumIdentificationItem
, pwiz::identdata::PeptideHypothesis
- peptideHypothesis
: pwiz::identdata::ProteinDetectionHypothesis
- peptideNextAA
: pwiz::data::pepxml::SearchHit
- peptidePrevAA
: pwiz::data::pepxml::SearchHit
- peptideProphet
: pwiz::eharmony::Observation
- peptideprophet_summary
: pwiz::data::pepxml::AnalysisSummary
- peptideProphetResult
: pwiz::data::pepxml::AnalysisResult
- peptidePtr
: pwiz::identdata::PeptideEvidence
, pwiz::identdata::SpectrumIdentificationItem
, pwiz::tradata::Transition
, pwiz::tradata::Target
- peptidePtrs
: pwiz::tradata::TraData
- peptides
: pwiz::identdata::SequenceCollection
- peptideSequence
: pwiz::eharmony::PeptideEntry
, pwiz::identdata::Peptide
- peptideTerminus
: pwiz::data::pepxml::AminoAcidModification
- pepxmlfile
: pwiz::analysis::PepxmlRecordReader::Config
- pimpl
: pwiz::utility::TabReader
, pwiz::peptideid::PeptideID::Iterator
, pwiz::peptideid::PeptideID_flat
, pwiz::peptideid::PeptideID_pepXml
, pwiz::identdata::DelimReader
, pwiz::identdata::MascotReader
, pwiz::identdata::Pep2MzIdent
, pwiz::utility::MSIHandler
, pwiz::utility::DefaultTabHandler
- polarity
: pwiz::analysis::SpectrumList_FilterPredicate_Polarity
- polynomialOrder
: TestData
- position
: pwiz::data::pepxml::ModAminoAcidMass
- positiveMs2Only
: pwiz::analysis::Pseudo2DGel::Config
- possible_charges
: TestSpectrumInfo
- possibleCharges
: ScanHeaderStruct
- possibleChargesArray
: ScanHeaderStruct
- post
: pwiz::identdata::PeptideEvidence
- ppProb
: pwiz::eharmony::FeatureSequenced
- pre
: pwiz::identdata::PeptideEvidence
- precision
: pwiz::analysis::SpectrumBinaryData::Config
, pwiz::msdata::BinaryDataEncoder::Config
, pwiz::data::BaseDiffConfig
- precisionOverrides
: pwiz::msdata::BinaryDataEncoder::Config
- precursor
: pwiz::msdata::mz5::ChromatogramMZ5
, pwiz::tradata::Target
, pwiz::msdata::Chromatogram
, pwiz::tradata::Transition
- precursor_ion_charge
: pwiz::data::pepxml::MixtureModel
- precursor_mz
: TestSpectrumInfo
- precursorCharge
: ScanHeaderStruct
, TestMS2Denoise
- precursorIntensity
: ScanHeaderStruct
- precursorList
: pwiz::msdata::mz5::SpectrumMZ5
- precursorMass
: TestMS2Denoise
- precursorMassType
: pwiz::data::pepxml::SearchSummary
- precursorMZ
: ScanHeaderStruct
- precursorMzSet_
: pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet
- precursorNeutralMass
: pwiz::data::pepxml::SpectrumQuery
- precursors
: pwiz::msdata::Spectrum
, pwiz::msdata::SpectrumInfo
- precursorScanNum
: ScanHeaderStruct
- prediction
: pwiz::tradata::Transition
- prefix
: pwiz::data::OBO
, pwiz::msdata::mz5::CVRefMZ5Data
, pwiz::data::Term
- preprocessWithLogarithm
: pwiz::analysis::PeakFinder_SNR::Config
- PRINT_HDF5_EXCEPTIONS
: pwiz::msdata::mz5::Configuration_mz5
- prior_probability
: pwiz::data::pepxml::MixtureModel
- probability
: pwiz::data::pepxml::PeptideProphetResult
, pwiz::calibration::MassSpread::Pair
- processingMethodList
: pwiz::msdata::mz5::DataProcessingMZ5
- processingMethods
: pwiz::msdata::DataProcessing
- product
: pwiz::tradata::Transition
, pwiz::msdata::Chromatogram
- productIsolationWindow
: pwiz::msdata::mz5::ChromatogramMZ5
- productList
: pwiz::msdata::mz5::SpectrumMZ5
- products
: pwiz::msdata::Spectrum
- propertyValues
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- protein
: pwiz::analysis::PepxmlRecordReader::record
, pwiz::data::pepxml::SearchHit
, pwiz::data::pepxml::AlternativeProtein
- protein_descr
: pwiz::peptideid::PeptideID::Record
- proteinAmbiguityGroup
: pwiz::identdata::ProteinDetectionList
- proteinDescr
: pwiz::data::pepxml::SearchHit
, pwiz::data::pepxml::AlternativeProtein
- proteinDetection
: pwiz::identdata::AnalysisCollection
- proteinDetectionHypothesis
: pwiz::identdata::ProteinAmbiguityGroup
- proteinDetectionListPtr
: pwiz::identdata::ProteinDetection
, pwiz::identdata::AnalysisData
- proteinDetectionProtocol
: pwiz::identdata::AnalysisProtocolCollection
- proteinDetectionProtocolPtr
: pwiz::identdata::ProteinDetection
- proteinListPtr
: pwiz::proteome::ProteomeData
- proteinPtrs
: pwiz::tradata::Peptide
, pwiz::tradata::TraData
- proteins
: pwiz::proteome::ProteinListSimple
- provider
: pwiz::identdata::IdentData
- publication
: pwiz::identdata::BibliographicReference
- publications
: pwiz::tradata::TraData
- publisher
: pwiz::identdata::BibliographicReference