ProteoWizard
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common functionality for base SpectrumList implementations More...
#include <SpectrumListBase.hpp>
Public Member Functions | |
virtual const boost::shared_ptr< const DataProcessing > | dataProcessingPtr () const |
implementation of SpectrumList | |
virtual void | setDataProcessingPtr (DataProcessingPtr dp) |
set DataProcessing | |
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virtual size_t | size () const =0 |
returns the number of spectra | |
virtual bool | empty () const |
returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL) | |
virtual const SpectrumIdentity & | spectrumIdentity (size_t index) const =0 |
access to a spectrum index | |
virtual size_t | find (const std::string &id) const |
find id in the spectrum index (returns size() on failure) | |
virtual IndexList | findNameValue (const std::string &name, const std::string &value) const |
find all spectrum indexes with specified name/value pair | |
virtual IndexList | findSpotID (const std::string &spotID) const |
find all spectrum indexes with spotID (returns empty vector on failure) | |
virtual SpectrumPtr | spectrum (size_t index, bool getBinaryData=false) const =0 |
retrieve a spectrum by index | |
virtual SpectrumPtr | spectrum (const SpectrumPtr &seed, bool getBinaryData) const |
get a copy of the seed spectrum, optionally with its binary data populated this is useful for formats like mzML that can delay loading of binary data | |
virtual SpectrumPtr | spectrum (size_t index, DetailLevel detailLevel) const |
retrieve a spectrum by index | |
virtual | ~SpectrumList () |
Protected Attributes | |
DataProcessingPtr | dp_ |
common functionality for base SpectrumList implementations
Definition at line 37 of file SpectrumListBase.hpp.
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inlinevirtual |
implementation of SpectrumList
Reimplemented from pwiz::msdata::SpectrumList.
Reimplemented in MyBase.
Definition at line 42 of file SpectrumListBase.hpp.
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inlinevirtual |
set DataProcessing
Definition at line 45 of file SpectrumListBase.hpp.
Referenced by hackInMemoryMSData(), and test().
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protected |
Definition at line 49 of file SpectrumListBase.hpp.