MyBase Class Reference

Inheritance diagram for MyBase:

List of all members.

Public Member Functions
virtual size_t	size () const
	returns the number of spectra
virtual const ChromatogramIdentity &	chromatogramIdentity (size_t index) const
	access to a chromatogram index
virtual ChromatogramPtr	chromatogram (size_t index, bool getBinaryData=false) const
	retrieve a chromatogram by index
virtual size_t	size () const
	returns the number of spectra
virtual const SpectrumIdentity &	spectrumIdentity (size_t index) const
	access to a spectrum index
virtual SpectrumPtr	spectrum (size_t index, bool getBinaryData=false) const
	retrieve a spectrum by index
virtual const boost::shared_ptr< const DataProcessing >	dataProcessingPtr () const
	implementation of ChromatogramList
Public Member Functions inherited from pwiz::msdata::SpectrumListBase
virtual void	setDataProcessingPtr (DataProcessingPtr dp)
	set DataProcessing
Public Member Functions inherited from pwiz::msdata::SpectrumList
virtual bool	empty () const
	returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL)
virtual size_t	find (const std::string &id) const
	find id in the spectrum index (returns size() on failure)
virtual IndexList	findNameValue (const std::string &name, const std::string &value) const
	find all spectrum indexes with specified name/value pair
virtual IndexList	findSpotID (const std::string &spotID) const
	find all spectrum indexes with spotID (returns empty vector on failure)
virtual SpectrumPtr	spectrum (const SpectrumPtr &seed, bool getBinaryData) const
	get a copy of the seed spectrum, optionally with its binary data populated this is useful for formats like mzML that can delay loading of binary data
virtual SpectrumPtr	spectrum (size_t index, DetailLevel detailLevel) const
	retrieve a spectrum by index
virtual	~SpectrumList ()
Public Member Functions inherited from pwiz::msdata::ChromatogramListBase
virtual void	setDataProcessingPtr (DataProcessingPtr dp)
	set DataProcessing
Public Member Functions inherited from pwiz::msdata::ChromatogramList
bool	empty () const
	returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL)
virtual size_t	find (const std::string &id) const
	find id in the chromatogram index (returns size() on failure)
virtual	~ChromatogramList ()

Additional Inherited Members
Protected Attributes inherited from pwiz::msdata::SpectrumListBase
DataProcessingPtr	dp_
Protected Attributes inherited from pwiz::msdata::ChromatogramListBase
DataProcessingPtr	dp_

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Detailed Description

Definition at line 32 of file ChromatogramListBaseTest.cpp.

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Member Function Documentation

virtual size_t MyBase::size ( ) const

inlinevirtual

returns the number of spectra

Implements pwiz::msdata::SpectrumList.

Definition at line 35 of file ChromatogramListBaseTest.cpp.

{return 0;}

virtual const ChromatogramIdentity& MyBase::chromatogramIdentity ( size_t  index ) const

inlinevirtual

access to a chromatogram index

Implements pwiz::msdata::ChromatogramList.

Definition at line 36 of file ChromatogramListBaseTest.cpp.

{throw runtime_error("heh");}

virtual ChromatogramPtr MyBase::chromatogram ( size_t  index, bool  getBinaryData = false  ) const

inlinevirtual

retrieve a chromatogram by index

• binary data arrays will be provided if (getBinaryData == true);
• client may assume the underlying Chromatogram* is valid

Implements pwiz::msdata::ChromatogramList.

Definition at line 37 of file ChromatogramListBaseTest.cpp.

{return ChromatogramPtr();}

virtual size_t MyBase::size ( ) const

inlinevirtual

returns the number of spectra

Implements pwiz::msdata::SpectrumList.

Definition at line 35 of file SpectrumListBaseTest.cpp.

{return 0;}

virtual const SpectrumIdentity& MyBase::spectrumIdentity ( size_t  index ) const

inlinevirtual

access to a spectrum index

Implements pwiz::msdata::SpectrumList.

Definition at line 36 of file SpectrumListBaseTest.cpp.

{throw runtime_error("heh");}

virtual SpectrumPtr MyBase::spectrum ( size_t  index, bool  getBinaryData = false  ) const

inlinevirtual

retrieve a spectrum by index

• binary data arrays will be provided if (getBinaryData == true);
• client may assume the underlying Spectrum* is valid

Implements pwiz::msdata::SpectrumList.

Definition at line 37 of file SpectrumListBaseTest.cpp.

{return SpectrumPtr();}

virtual const boost::shared_ptr<const DataProcessing> MyBase::dataProcessingPtr ( ) const

inlinevirtual

implementation of ChromatogramList

Reimplemented from pwiz::msdata::ChromatogramListBase.

Definition at line 40 of file SpectrumListBaseTest.cpp.

Referenced by test().

{return dp_;}

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The documentation for this class was generated from the following files:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/msdata/ChromatogramListBaseTest.cpp
• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/msdata/SpectrumListBaseTest.cpp