implementation of SpectrumList, backed by an mzXML file More...
#include <SpectrumList_mzXML.hpp>
Inheritance diagram for pwiz::msdata::SpectrumList_mzXML:
Classes | |
| struct | index_not_found |
| exception thrown if create(*,*,true) is called and the mzXML index cannot be found More... | |
Static Public Member Functions | |
| static SpectrumListPtr | create (boost::shared_ptr< std::istream > is, const MSData &msd, bool indexed=true) |
Additional Inherited Members | |
 Public Member Functions inherited from pwiz::msdata::SpectrumListBase | |
| virtual const boost::shared_ptr< const DataProcessing > | dataProcessingPtr () const |
| implementation of SpectrumList | |
| virtual void | setDataProcessingPtr (DataProcessingPtr dp) |
| set DataProcessing | |
| Public Member Functions inherited from pwiz::msdata::SpectrumList | |
| virtual size_t | size () const =0 |
| returns the number of spectra | |
| virtual bool | empty () const |
| returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL) | |
| virtual const SpectrumIdentity & | spectrumIdentity (size_t index) const =0 |
| access to a spectrum index | |
| virtual size_t | find (const std::string &id) const |
| find id in the spectrum index (returns size() on failure) | |
| virtual IndexList | findNameValue (const std::string &name, const std::string &value) const |
| find all spectrum indexes with specified name/value pair | |
| virtual IndexList | findSpotID (const std::string &spotID) const |
| find all spectrum indexes with spotID (returns empty vector on failure) | |
| virtual SpectrumPtr | spectrum (size_t index, bool getBinaryData=false) const =0 |
| retrieve a spectrum by index | |
| virtual SpectrumPtr | spectrum (const SpectrumPtr &seed, bool getBinaryData) const |
| get a copy of the seed spectrum, optionally with its binary data populated this is useful for formats like mzML that can delay loading of binary data | |
| virtual SpectrumPtr | spectrum (size_t index, DetailLevel detailLevel) const |
| retrieve a spectrum by index | |
| virtual | ~SpectrumList () |
| Protected Attributes inherited from pwiz::msdata::SpectrumListBase | |
| DataProcessingPtr | dp_ |
Detailed Description
implementation of SpectrumList, backed by an mzXML file
Definition at line 39 of file SpectrumList_mzXML.hpp.
Member Function Documentation
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static |
The documentation for this class was generated from the following file:
- /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/msdata/SpectrumList_mzXML.hpp
