Reader_Thermo_Test.cpp File Reference

#include "pwiz/utility/misc/unit.hpp"
#include "Reader_Thermo.hpp"
#include "pwiz/utility/misc/VendorReaderTestHarness.hpp"
#include "pwiz/utility/misc/Filesystem.hpp"
#include "pwiz/utility/misc/Std.hpp"

Go to the source code of this file.

Classes
struct	IsRawFile

Functions
int	main (int argc, char *argv[])

---

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 42 of file Reader_Thermo_Test.cpp.

References pwiz::msdata::detail::createInstrumentConfigurations(), pwiz::cv::cv(), CVID_Unknown, e(), boost::lexical_cast(), TEST_EPILOG, TEST_FAILED, TEST_PROLOG, testReader(), pwiz::msdata::detail::translateAsInstrumentModel(), and unit_assert.

{
    TEST_PROLOG(argc, argv)

    #if defined(PWIZ_READER_THERMO) && !defined(PWIZ_READER_THERMO_TEST_ACCEPT_ONLY)
    const bool testAcceptOnly = false;
    #else
    const bool testAcceptOnly = true;
    #endif

    try
    {
        #ifdef PWIZ_READER_THERMO

        using namespace pwiz::msdata;
        using namespace pwiz::msdata::detail;
        using namespace pwiz::cv;
        using namespace pwiz::util;

        // test that all instrument types are handled by translation functions (skipping the 'Unknown' type)
        bool allInstrumentTestsPassed = true;
        for (int i=0; i < (int) InstrumentModelType_Count; ++i)
        {
            InstrumentModelType model = (InstrumentModelType) i;

            try
            {
                unit_assert(translateAsInstrumentModel(model) != CVID_Unknown);

                Component dummySource;
                vector<InstrumentConfiguration> configurations = createInstrumentConfigurations(dummySource, model);

                switch (model)
                {
                    case InstrumentModelType_Tempus_TOF:
                    case InstrumentModelType_Element_2:
                    case InstrumentModelType_Element_XR:
                    case InstrumentModelType_Element_GD:
                    case InstrumentModelType_Delta_Plus_Advantage:
                    case InstrumentModelType_Delta_Plus_XP:
                    case InstrumentModelType_Neptune:
                    case InstrumentModelType_Triton:
                        unit_assert(configurations.empty());
                        break;

                    default:
                        unit_assert(!configurations.empty());
                        break;
                }

                // test for ionization types for this instrument
                vector<IonizationType> ionizationTypes = getIonSourcesForInstrumentModel(model);

                switch (model)
                {
                    case InstrumentModelType_Element_XR:
                    case InstrumentModelType_Element_2:
                    case InstrumentModelType_Delta_Plus_Advantage:
                    case InstrumentModelType_Delta_Plus_XP:
                    case InstrumentModelType_Neptune:
                    case InstrumentModelType_Tempus_TOF:
                    case InstrumentModelType_Triton:
                    case InstrumentModelType_MAT253:
                    case InstrumentModelType_MAT900XP:
                    case InstrumentModelType_MAT900XP_Trap:
                    case InstrumentModelType_MAT95XP:
                    case InstrumentModelType_MAT95XP_Trap:
                    case InstrumentModelType_Surveyor_PDA:
                    case InstrumentModelType_Accela_PDA:
                        unit_assert(ionizationTypes.empty());
                        break;

                    default:
                        unit_assert(!ionizationTypes.empty());
                        break;
                }

                // test for mass analyzer types for this instrument
                vector<MassAnalyzerType> massAnalyzerTypes = getMassAnalyzersForInstrumentModel(model);

                switch (model)
                {
                    case InstrumentModelType_Element_XR:
                    case InstrumentModelType_Element_2:
                    case InstrumentModelType_Element_GD:
                    case InstrumentModelType_Delta_Plus_Advantage:
                    case InstrumentModelType_Delta_Plus_XP:
                    case InstrumentModelType_Neptune:
                    case InstrumentModelType_Triton:
                    case InstrumentModelType_Surveyor_PDA:
                    case InstrumentModelType_Accela_PDA:
                        unit_assert(massAnalyzerTypes.empty());
                        break;

                    default:
                        unit_assert(!massAnalyzerTypes.empty());
                        break;
                }

                // test for detector types for this instrument
                vector<DetectorType> detectorTypes = getDetectorsForInstrumentModel(model);

                switch (model)
                {
                    case InstrumentModelType_Element_GD:
                    case InstrumentModelType_Element_XR:
                    case InstrumentModelType_Element_2:
                    case InstrumentModelType_Delta_Plus_Advantage:
                    case InstrumentModelType_Delta_Plus_XP:
                    case InstrumentModelType_Neptune:
                    case InstrumentModelType_Tempus_TOF:
                    case InstrumentModelType_Triton:
                    case InstrumentModelType_MAT253:
                    case InstrumentModelType_MAT900XP:
                    case InstrumentModelType_MAT900XP_Trap:
                    case InstrumentModelType_MAT95XP:
                    case InstrumentModelType_MAT95XP_Trap:
                        unit_assert(detectorTypes.empty());
                        break;

                    default:
                        unit_assert(!detectorTypes.empty());
                        break;
                }

                // test for translation of scan filter mass analyzer type to real mass analyzer type
                BOOST_FOREACH(MassAnalyzerType realType, massAnalyzerTypes)
                {
                    bool hasCorrespondingScanFilterType = false;
                    for (int j=0; j < (int) ScanFilterMassAnalyzerType_Count; ++j)
                        if (convertScanFilterMassAnalyzer((ScanFilterMassAnalyzerType) j, model) == realType)
                            hasCorrespondingScanFilterType = true;
                    unit_assert(hasCorrespondingScanFilterType);
                }
            }
            catch (runtime_error& e)
            {
                cerr << "Unit test failed for instrument model " << lexical_cast<string>(model) << ":\n" << e.what() << endl;
                allInstrumentTestsPassed = false;
            }
        }

        unit_assert(allInstrumentTestsPassed);
        #endif

        pwiz::util::testReader(pwiz::msdata::Reader_Thermo(), testArgs, testAcceptOnly, IsRawFile());
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}