Reader_Thermo.hpp

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//
// $Id: Reader_Thermo.hpp 3808 2012-07-24 20:31:10Z donmarsh $
//
//
// Original author: Darren Kessner <darren@proteowizard.org>
//
// Copyright 2008 Spielberg Family Center for Applied Proteomics
//   Cedars-Sinai Medical Center, Los Angeles, California  90048
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//


#ifndef _READER_THERMO_HPP_
#define _READER_THERMO_HPP_


#include "pwiz/utility/misc/Export.hpp"
#include "pwiz/data/msdata/Reader.hpp"

namespace pwiz {
namespace msdata {


class PWIZ_API_DECL Reader_Thermo : public Reader
{
    public:

    virtual std::string identify(const std::string& filename,
                        const std::string& head) const;

    virtual void read(const std::string& filename,
                      const std::string& head,
                      MSData& result,
                      int runIndex = 0,
                      const Config& config = Config()) const;

    virtual void read(const std::string& filename,
                      const std::string& head,
                      std::vector<MSDataPtr>& results,
                      const Config& config = Config()) const
    {
        results.push_back(MSDataPtr(new MSData));
        read(filename, head, *results.back(), 0, config);
    }

        virtual const char *getType() const {return "Thermo RAW";}

    /// checks header for "Finnigan" wide char string
        static bool hasRAWHeader(const std::string& head);
};


} // namespace msdata
} // namespace pwiz


#endif // _READER_THERMO_HPP_