pwiz::cv Namespace Reference

Classes
struct	CV
	Information about an ontology or CV source and a short 'lookup' tag to refer to. More...
struct	CVTermInfo
	structure for holding CV term info More...

Functions
PWIZ_API_DECL const CV &	cv (const std::string &prefix)
	returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO
PWIZ_API_DECL const CVTermInfo &	cvTermInfo (CVID cvid)
	returns CV term info for the specified CVID
PWIZ_API_DECL const CVTermInfo &	cvTermInfo (const char *id)
	returns CV term info for the specified id (accession number)
PWIZ_API_DECL const CVTermInfo &	cvTermInfo (const std::string &id)
PWIZ_API_DECL bool	cvIsA (CVID child, CVID parent)
	returns true iff child IsA parent in the CV
PWIZ_API_DECL const std::vector< CVID > &	cvids ()
	returns vector of all valid CVIDs

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Function Documentation

PWIZ_API_DECL const CV& pwiz::cv::cv

(

const std::string &

prefix

)

returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO

Referenced by initializeTestData(), and main().

PWIZ_API_DECL const CVTermInfo& pwiz::cv::cvTermInfo

(

CVID

cvid

)

returns CV term info for the specified CVID

Referenced by WriteCVParam::operator()(), pwiz::tradata::TextWriter::operator()(), pwiz::msdata::TextWriter::operator()(), pwiz::identdata::TextWriter::operator()(), test(), testCleavageAgents(), testIDTranslation(), testIsChildOf(), testOtherRelations(), testPropertyValues(), and testSynonyms().

PWIZ_API_DECL const CVTermInfo& pwiz::cv::cvTermInfo

(

const char *

id

)

returns CV term info for the specified id (accession number)

PWIZ_API_DECL const CVTermInfo& pwiz::cv::cvTermInfo

(

const std::string &

id

)

PWIZ_API_DECL bool pwiz::cv::cvIsA	(	CVID	child,
		CVID	parent
	)

returns true iff child IsA parent in the CV

Referenced by EvenMS2Predicate::accept(), pwiz::data::CVParamIsChildOf::operator()(), and testIsA().

PWIZ_API_DECL const std::vector<CVID>& pwiz::cv::cvids

(

)

returns vector of all valid CVIDs