TraData.hpp File Reference

#include "pwiz/utility/misc/Export.hpp"
#include "pwiz/data/common/cv.hpp"
#include "pwiz/data/common/ParamTypes.hpp"
#include <vector>
#include <string>

Go to the source code of this file.

Classes
struct	pwiz::tradata::Contact
struct	pwiz::tradata::Publication
struct	pwiz::tradata::Software
struct	pwiz::tradata::RetentionTime
struct	pwiz::tradata::Prediction
	Information about a prediction for a suitable transition using some software. More...
struct	pwiz::tradata::Evidence
	Information about empirical mass spectrometer observations of the peptide. More...
struct	pwiz::tradata::Validation
	Information about the state of validation of a transition on a given instrument model. More...
struct	pwiz::tradata::Instrument
	Instrument on which transitions are validated. More...
struct	pwiz::tradata::Configuration
	Instrument configuration used in the validation or optimization of the transitions. More...
struct	pwiz::tradata::Interpretation
	A possible interpration of the product ion for a transition. More...
struct	pwiz::tradata::Protein
struct	pwiz::tradata::Modification
	A molecule modification specification. More...
struct	pwiz::tradata::Peptide
	Peptide for which one or more transitions are intended to identify. More...
struct	pwiz::tradata::Compound
	Chemical compound other than a peptide for which one or more transitions. More...
struct	pwiz::tradata::Precursor
	Precursor (Q1) of the transition. More...
struct	pwiz::tradata::Product
	Product (Q3) of the transition. More...
struct	pwiz::tradata::Transition
struct	pwiz::tradata::Target
	A peptide or compound that is to be included or excluded from a target list of precursor m/z values. More...
struct	pwiz::tradata::TargetList
	List of precursor m/z targets to include or exclude. More...
struct	pwiz::tradata::TraData

Namespaces
namespace	pwiz
	AMTContainer.hpp.
namespace	pwiz::tradata
namespace	pwiz::tradata::IO

Typedefs
typedef boost::shared_ptr < Contact >	pwiz::tradata::ContactPtr
typedef boost::shared_ptr < Software >	pwiz::tradata::SoftwarePtr
typedef boost::shared_ptr < Instrument >	pwiz::tradata::InstrumentPtr
typedef boost::shared_ptr < Protein >	pwiz::tradata::ProteinPtr
typedef boost::shared_ptr < Peptide >	pwiz::tradata::PeptidePtr
typedef boost::shared_ptr < Compound >	pwiz::tradata::CompoundPtr
typedef boost::shared_ptr < TraData >	pwiz::tradata::TraDataPtr

Functions
PWIZ_API_DECL std::vector< CV >	pwiz::tradata::defaultCVList ()
	returns a default list of CVs used in an TraML document; currently includes PSI-MS, Unit Ontology, and UNIMOD