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Please cite us in your publications

A cross-platform toolkit for mass spectrometry and proteomics. Chambers, M.C., MacLean, B., ... Mallick, P. Nature Biotechnology 30, 918-920 (2012). Article →

ProteoWizard relies upon the support of the community. Donations are happily accepted. We are also happy to participate in grant funded activities as well. Thank you for your support!

Installation

Windows Users: The only requirement is .NET Framework 4.7.2 (or newer). If you get a message saying .NET 3.5 is required on Windows 8, 8.1, or 10, enable it with this process.
Linux Users: There are two options for using ProteoWizard on Linux: the Linux .NET executables or running the Windows executables via Wine/Docker. The Linux .NET executables can convert Thermo, Bruker and Waters files; the other vendor formats need the Wine/Docker option. For Docker instructions, see here. For the Linux .NET executables, download the Linux .NET tarball, navigate to the download directory. Once there, use 'tar xzvf [archive name].tar.gz' on the archive and move the extracted directory into a directory of your choice. The tarball includes the .NET runtime, so nothing else needs to be installed. PRO-TIP: For convenience, adjust your "PATH" environment variable to include your ProteoWizard tools directory, so that the command line tools may be run from any directory.

Versions

We are formally at version 4. Older versions are archived on TeamCity.

There are several flavors of ProteoWizard depending upon your intended use. If you are primarily interested in using the tools, the binary distributions for your platform are most likely what you want. If you are interested in using ProteoWizard as part of a software project you are developing, check out the code from our GitHub repository. Other packages are also on Teamcity.

Developers interested in building the ProteoWizard libraries for use in their own projects can build the repository with the .NET SDK, using build.bat on Windows or build.sh on Linux; the README describes the options.