pwiz::msdata::ChromatogramListSimple Struct Reference

Simple writeable in-memory implementation of ChromatogramList. More...

#include <MSData.hpp>

Inheritance diagram for pwiz::msdata::ChromatogramListSimple:

List of all members.

Public Member Functions
virtual size_t	size () const
	returns the number of chromatograms
virtual bool	empty () const
	returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL)
virtual const ChromatogramIdentity &	chromatogramIdentity (size_t index) const
	access to a chromatogram index
virtual ChromatogramPtr	chromatogram (size_t index, bool getBinaryData) const
	retrieve a chromatogram by index
virtual const boost::shared_ptr< const DataProcessing >	dataProcessingPtr () const
	returns the data processing affecting spectra retrieved through this interface
Public Member Functions inherited from pwiz::msdata::ChromatogramList
virtual size_t	find (const std::string &id) const
	find id in the chromatogram index (returns size() on failure)
virtual	~ChromatogramList ()

Public Attributes
std::vector< ChromatogramPtr >	chromatograms
DataProcessingPtr	dp

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Detailed Description

Simple writeable in-memory implementation of ChromatogramList.

Note: This chromatogram() implementation returns internal ChromatogramPtrs.

Definition at line 784 of file MSData.hpp.

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Member Function Documentation

virtual size_t pwiz::msdata::ChromatogramListSimple::size ( ) const

inlinevirtual

returns the number of chromatograms

Implements pwiz::msdata::ChromatogramList.

Definition at line 791 of file MSData.hpp.

{return chromatograms.size();}

virtual bool pwiz::msdata::ChromatogramListSimple::empty ( ) const

inlinevirtual

returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL)

Reimplemented from pwiz::msdata::ChromatogramList.

Definition at line 792 of file MSData.hpp.

{return chromatograms.empty() && !dp.get();}

virtual const ChromatogramIdentity& pwiz::msdata::ChromatogramListSimple::chromatogramIdentity ( size_t  index ) const

virtual

access to a chromatogram index

Implements pwiz::msdata::ChromatogramList.

virtual ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram ( size_t  index, bool  getBinaryData  ) const

virtual

retrieve a chromatogram by index

• binary data arrays will be provided if (getBinaryData == true);
• client may assume the underlying Chromatogram* is valid

Implements pwiz::msdata::ChromatogramList.

virtual const boost::shared_ptr<const DataProcessing> pwiz::msdata::ChromatogramListSimple::dataProcessingPtr ( ) const

virtual

returns the data processing affecting spectra retrieved through this interface

• may return a null shared pointer

Reimplemented from pwiz::msdata::ChromatogramList.

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Member Data Documentation

std::vector<ChromatogramPtr> pwiz::msdata::ChromatogramListSimple::chromatograms

Definition at line 786 of file MSData.hpp.

Referenced by testChromatogramList(), testChromatogramListWithPositions(), and testChromatograms().

DataProcessingPtr pwiz::msdata::ChromatogramListSimple::dp

Definition at line 787 of file MSData.hpp.

Referenced by testChromatogramList(), and testChromatograms().

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The documentation for this struct was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/msdata/MSData.hpp