Implementation of IonTypeType from the mzIdentML schema. More...
#include <IdentData.hpp>
Public Member Functions | |
| IonType () | |
| bool | empty () const |
 Public Member Functions inherited from pwiz::data::CVParam | |
| CVParam (CVID _cvid, float _value, CVID _units=CVID_Unknown) | |
| CVParam (CVID _cvid, double _value, CVID _units=CVID_Unknown) | |
| CVParam (CVID _cvid, int _value, CVID _units=CVID_Unknown) | |
| CVParam (CVID _cvid, long _value, CVID _units=CVID_Unknown) | |
| CVParam (CVID _cvid, unsigned int _value, CVID _units=CVID_Unknown) | |
| CVParam (CVID _cvid, unsigned long _value, CVID _units=CVID_Unknown) | |
| CVParam (CVID _cvid, std::string _value, CVID _units=CVID_Unknown) | |
| CVParam (CVID _cvid, const char *_value, CVID _units=CVID_Unknown) | |
| CVParam (CVID _cvid, bool _value, CVID _units=CVID_Unknown) | |
| special case for bool (no lexical_cast) | |
| CVParam (CVID _cvid=CVID_Unknown) | |
| constructor for non-valued CVParams | |
| ~CVParam () | |
| template<typename value_type > | |
| value_type | valueAs () const |
| templated value access with type conversion | |
| std::string | name () const |
| convenience function to return string for the cvid | |
| std::string | unitsName () const |
| convenience function to return string for the units | |
| double | timeInSeconds () const |
| convenience function to return time in seconds (throws if units not a time unit) | |
| std::string | valueFixedNotation () const |
| convenience function to return value without scientific notation (throws if not a double) | |
| bool | operator== (const CVParam &that) const |
| equality operator | |
| bool | operator!= (const CVParam &that) const |
| inequality operator | |
Public Attributes | |
| std::vector< int > | index |
| int | charge |
| std::vector< FragmentArrayPtr > | fragmentArray |
| Public Attributes inherited from pwiz::data::CVParam | |
| CVID | cvid |
| std::string | value |
| CVID | units |
Detailed Description
Implementation of IonTypeType from the mzIdentML schema.
IonType defines the index of fragmentation ions being reported, importing a CV term for the type of ion e.g. b ion. Example: if b3 b7 b8 and b10 have been identified, the index attribute will contain 3 7 8 10, and the corresponding values will be reported in parallel arrays below
Definition at line 607 of file IdentData.hpp.
Constructor & Destructor Documentation
| pwiz::identdata::IonType::IonType | ( | ) |
Member Function Documentation
| bool pwiz::identdata::IonType::empty | ( | ) | const |
Reimplemented from pwiz::data::CVParam.
Member Data Documentation
| std::vector<int> pwiz::identdata::IonType::index |
Definition at line 611 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testIonType().
| int pwiz::identdata::IonType::charge |
Definition at line 612 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testIonType().
| std::vector<FragmentArrayPtr> pwiz::identdata::IonType::fragmentArray |
Definition at line 613 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testIonType().
The documentation for this struct was generated from the following file:
- /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/identdata/IdentData.hpp
