#include <Reader_ABI.hpp>

Inheritance diagram for pwiz::msdata::Reader_ABI:

Public Member Functions
virtual std::string	identify (const std::string &filename, const std::string &head) const
	return file type iff Reader recognizes the file, else empty;
virtual void	read (const std::string &filename, const std::string &head, MSData &result, int sampleIndex=0, const Config &config=Config()) const
	fill in the MSData structure from the first (or only) sample
virtual void	read (const std::string &filename, const std::string &head, std::vector< MSDataPtr > &results, const Config &config=Config()) const
	fill in a vector of MSData structures; provides support for multi-run input files
virtual void	readIds (const std::string &filename, const std::string &head, std::vector< std::string > &results, const Config &config=Config()) const
	fill in a vector of MSData.Id values; provides support for multi-run input files
virtual const char *	getType () const
	returns a unique string identifying the reader type
Public Member Functions inherited from pwiz::msdata::Reader
bool	accept (const std::string &filename, const std::string &head) const
	return true iff Reader recognizes the file as one it should handle
virtual	~Reader ()

Detailed Description

Definition at line 42 of file Reader_ABI.hpp.

Member Function Documentation

virtual std::string pwiz::msdata::Reader_ABI::identify	(	const std::string &	filename,
		const std::string &	head
	)		const

virtual

return file type iff Reader recognizes the file, else empty;

note: for formats requiring a 3rd party DLL identify() should return non-empty if it recognized the format, even though reading may fail if the 3rd party DLL isn't actually present Reader may filter based on filename and/or head of the file

Implements pwiz::msdata::Reader.

virtual void pwiz::msdata::Reader_ABI::read	(	const std::string &	filename,
		const std::string &	head,
		MSData &	result,
		int	runIndex = `0`,
		const Config &	config = `Config()`
	)		const

virtual

fill in the MSData structure from the first (or only) sample

Implements pwiz::msdata::Reader.

virtual void pwiz::msdata::Reader_ABI::read	(	const std::string &	filename,
		const std::string &	head,
		std::vector< MSDataPtr > &	results,
		const Config &	config = `Config()`
	)		const

virtual

fill in a vector of MSData structures; provides support for multi-run input files

Implements pwiz::msdata::Reader.

virtual void pwiz::msdata::Reader_ABI::readIds	(	const std::string &	filename,
		const std::string &	head,
		std::vector< std::string > &	dataIds,
		const Config &	config = `Config()`
	)		const

virtual

fill in a vector of MSData.Id values; provides support for multi-run input files

Reimplemented from pwiz::msdata::Reader.

virtual const char* pwiz::msdata::Reader_ABI::getType ( ) const

inlinevirtual

returns a unique string identifying the reader type

Implements pwiz::msdata::Reader.

Definition at line 65 of file Reader_ABI.hpp.

{return "ABSciex WIFF";}

The documentation for this class was generated from the following file:

/Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp

Public Member Functions

Detailed Description

Member Function Documentation