Peptide.hpp File Reference

#include "pwiz/utility/misc/Export.hpp"
#include "pwiz/utility/chemistry/Chemistry.hpp"
#include <boost/shared_ptr.hpp>
#include "Modification.hpp"

Go to the source code of this file.

Classes
class	pwiz::proteome::Peptide
	represents a peptide or polypeptide (a sequence of amino acids) More...
class	pwiz::proteome::Fragmentation
	provides fragment ion masses for a peptide More...

Namespaces
namespace	pwiz
	AMTContainer.hpp.
namespace	pwiz::proteome

Macros
#define	MODIFICATION_PARSING_ARGUMENTS

Variables
	ModificationParsing_Off
	ModificationParsing_ByFormula
	any non-AA characters will cause an exception
	ModificationParsing_ByMass
	oxidized P in peptide: PEP(O)TIDE
	ModificationDelimiter_Parentheses
	ModificationDelimiter_Brackets
	'(' and ')'

---

Macro Definition Documentation

#define MODIFICATION_PARSING_ARGUMENTS

Value:

ModificationParsing mp = ModificationParsing_Off, \
    ModificationDelimiter md = ModificationDelimiter_Parentheses

Definition at line 56 of file Peptide.hpp.

---

Variable Documentation

ModificationParsing_Off

Definition at line 42 of file Peptide.hpp.

Referenced by modificationTest().

ModificationParsing_ByFormula

any non-AA characters will cause an exception

Definition at line 42 of file Peptide.hpp.

ModificationParsing_ByMass

oxidized P in peptide: PEP(O)TIDE

Definition at line 42 of file Peptide.hpp.

ModificationDelimiter_Parentheses

Definition at line 51 of file Peptide.hpp.

ModificationDelimiter_Brackets

'(' and ')'

Definition at line 51 of file Peptide.hpp.