Digestion.hpp File Reference

#include "pwiz/utility/misc/Export.hpp"
#include "pwiz/data/common/cv.hpp"
#include "pwiz/utility/chemistry/Chemistry.hpp"
#include "Peptide.hpp"
#include <boost/regex.hpp>
#include "boost/shared_ptr.hpp"
#include <string>
#include <limits>
#include <set>

Go to the source code of this file.

Classes
class	pwiz::proteome::DigestedPeptide
	peptide subclass that contains extra metadata provided by digestion More...
class	pwiz::proteome::Digestion
	enumerates the peptides from proteolytic digestion of a polypeptide or protein; More...
struct	pwiz::proteome::Digestion::Config
	sets constraints for valid peptides produced by iterating the digestion More...
class	pwiz::proteome::Digestion::const_iterator
	provides forward-only, read-only iteration to enumerate peptides More...

Namespaces
namespace	pwiz
	AMTContainer.hpp.
namespace	pwiz::proteome

Variables
	NonSpecific = 0
	SemiSpecific = 1
	neither termini must match digestion motif(s)

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Variable Documentation

NonSpecific = 0

Definition at line 120 of file Digestion.hpp.

Referenced by testBSADigestion(), testFind(), and testSerialize().

SemiSpecific = 1

neither termini must match digestion motif(s)

Definition at line 121 of file Digestion.hpp.

Referenced by testBSADigestion(), testEnzyme(), testFind(), and testSerialize().