WhittakerSmoother.hpp

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//
// $Id: WhittakerSmoother.hpp 1191 2009-08-14 19:33:05Z chambm $
//
//
// Original author: Matt Chambers <matt.chambers <a.t> vanderbilt.edu>
//
// Copyright 2008 Vanderbilt University - Nashville, TN 37232
//
// Licensed under the Apache License, Version 2.0 (the "License"); 
// you may not use this file except in compliance with the License. 
// You may obtain a copy of the License at 
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software 
// distributed under the License is distributed on an "AS IS" BASIS, 
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
// See the License for the specific language governing permissions and 
// limitations under the License.
//


// Derived from ACS article:
// A Perfect Smoother
// Paul H. C. Eilers
// Anal. Chem., 2003, 75 (14), 3631-3636 • DOI: 10.1021/ac034173t


#ifndef _WHITTAKERSMOOTHER_HPP_ 
#define _WHITTAKERSMOOTHER_HPP_


#include "Smoother.hpp"


namespace pwiz {
namespace analysis {


struct PWIZ_API_DECL WhittakerSmoother : public Smoother
{
    WhittakerSmoother(double lambdaCoefficient);

    /// smooth y values to existing vectors using Whittaker algorithm;
    /// note: in the case of sparse vectors, smoothing may fill in samples not present
    ///       in the original data, so make sure to check the size of the output vectors
    virtual void smooth(const std::vector<double>& x, const std::vector<double>& y,
                        std::vector<double>& xSmoothed, std::vector<double>& ySmoothed);

    /// smooth y values and copy back to the input vectors using Whittaker algorithm;
    /// note: in the case of sparse vectors, smoothing may fill in samples not present
    ///       in the original data, so make sure to check the size of the output vectors
    virtual void smooth_copy(std::vector<double>& x, std::vector<double>& y);

    private:
    double lambda;
};


} // namespace analysis
} // namespace pwiz

#endif // _WHITTAKERSMOOTHER_HPP_